Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_899

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_898 and Pf6N2E2_899 are separated by 449 nucleotides Pf6N2E2_898 - putative major facilitator superfamily (MFS) transporter, at 1,050,876 to 1,052,195 _898 Pf6N2E2_899 - hypothetical protein, at 1,052,645 to 1,052,776 _899 Position (kb) 1052 1053Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1051.888 kb on + strand, within Pf6N2E2_898at 1051.889 kb on - strand, within Pf6N2E2_898at 1052.046 kb on + strand, within Pf6N2E2_898at 1052.047 kb on - strand, within Pf6N2E2_898at 1052.116 kb on + strandat 1052.117 kb on - strandat 1052.222 kb on + strandat 1052.284 kb on + strandat 1052.284 kb on + strandat 1052.284 kb on + strandat 1052.284 kb on + strandat 1052.285 kb on - strandat 1052.306 kb on + strandat 1052.306 kb on + strandat 1052.307 kb on - strandat 1052.307 kb on - strandat 1052.307 kb on - strandat 1052.307 kb on - strandat 1052.307 kb on - strandat 1052.307 kb on - strandat 1052.308 kb on + strandat 1052.309 kb on - strandat 1052.395 kb on - strandat 1052.395 kb on - strandat 1052.418 kb on - strandat 1052.505 kb on + strandat 1052.506 kb on - strandat 1052.531 kb on + strandat 1052.532 kb on - strandat 1052.559 kb on - strandat 1052.581 kb on - strandat 1052.630 kb on + strandat 1052.630 kb on + strandat 1052.630 kb on + strandat 1052.630 kb on + strandat 1052.630 kb on + strandat 1052.631 kb on - strandat 1052.631 kb on - strandat 1052.631 kb on - strandat 1052.639 kb on - strandat 1052.639 kb on - strandat 1052.657 kb on + strandat 1052.657 kb on + strandat 1052.658 kb on - strandat 1052.725 kb on + strand, within Pf6N2E2_899at 1052.790 kb on - strandat 1052.814 kb on - strandat 1052.853 kb on + strandat 1052.854 kb on - strandat 1052.854 kb on - strandat 1052.882 kb on + strandat 1052.969 kb on + strandat 1052.969 kb on + strandat 1052.970 kb on - strandat 1053.061 kb on + strandat 1053.062 kb on - strandat 1053.062 kb on - strandat 1053.080 kb on + strandat 1053.080 kb on + strandat 1053.081 kb on - strandat 1053.081 kb on - strandat 1053.083 kb on + strandat 1053.083 kb on + strandat 1053.083 kb on + strandat 1053.083 kb on + strandat 1053.083 kb on + strandat 1053.097 kb on + strandat 1053.097 kb on + strandat 1053.097 kb on + strandat 1053.097 kb on + strandat 1053.097 kb on + strandat 1053.098 kb on - strandat 1053.115 kb on + strandat 1053.115 kb on + strandat 1053.115 kb on + strandat 1053.115 kb on + strandat 1053.115 kb on + strandat 1053.116 kb on - strandat 1053.122 kb on + strandat 1053.209 kb on + strandat 1053.209 kb on + strandat 1053.210 kb on - strandat 1053.314 kb on + strandat 1053.314 kb on + strandat 1053.314 kb on + strandat 1053.314 kb on + strandat 1053.315 kb on - strandat 1053.315 kb on - strandat 1053.407 kb on + strandat 1053.416 kb on + strandat 1053.416 kb on + strandat 1053.437 kb on + strandat 1053.529 kb on + strandat 1053.626 kb on + strandat 1053.646 kb on - strandat 1053.741 kb on - strandat 1053.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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1,051,888 + Pf6N2E2_898 0.77 +0.5
1,051,889 - Pf6N2E2_898 0.77 -0.8
1,052,046 + Pf6N2E2_898 0.89 +0.0
1,052,047 - Pf6N2E2_898 0.89 -0.2
1,052,116 + -0.0
1,052,117 - +1.1
1,052,222 + +0.7
1,052,284 + -1.9
1,052,284 + -0.8
1,052,284 + +3.0
1,052,284 + -0.3
1,052,285 - +0.3
1,052,306 + +0.5
1,052,306 + +0.6
1,052,307 - -0.4
1,052,307 - -0.3
1,052,307 - +0.4
1,052,307 - +0.4
1,052,307 - -0.1
1,052,307 - +0.3
1,052,308 + -1.1
1,052,309 - +0.5
1,052,395 - +0.3
1,052,395 - -0.4
1,052,418 - -0.9
1,052,505 + +0.4
1,052,506 - +0.2
1,052,531 + -2.6
1,052,532 - -0.6
1,052,559 - +0.1
1,052,581 - +0.5
1,052,630 + -2.0
1,052,630 + -0.9
1,052,630 + +2.6
1,052,630 + -0.8
1,052,630 + +1.4
1,052,631 - +1.4
1,052,631 - -1.6
1,052,631 - +1.0
1,052,639 - -0.8
1,052,639 - -0.6
1,052,657 + +0.6
1,052,657 + +0.4
1,052,658 - +0.1
1,052,725 + Pf6N2E2_899 0.61 +0.3
1,052,790 - +0.2
1,052,814 - +0.1
1,052,853 + +0.3
1,052,854 - -0.9
1,052,854 - +0.2
1,052,882 + +1.0
1,052,969 + +0.0
1,052,969 + -0.6
1,052,970 - +0.1
1,053,061 + +0.3
1,053,062 - -1.0
1,053,062 - +0.9
1,053,080 + +0.0
1,053,080 + +0.0
1,053,081 - +0.3
1,053,081 - -0.3
1,053,083 + -1.1
1,053,083 + -0.5
1,053,083 + -0.6
1,053,083 + -1.2
1,053,083 + -0.1
1,053,097 + +0.3
1,053,097 + -0.3
1,053,097 + -1.4
1,053,097 + -0.5
1,053,097 + -0.8
1,053,098 - -2.0
1,053,115 + -0.4
1,053,115 + -0.6
1,053,115 + -0.4
1,053,115 + -0.3
1,053,115 + +0.0
1,053,116 - +1.0
1,053,122 + +0.1
1,053,209 + -0.8
1,053,209 + +0.4
1,053,210 - -0.7
1,053,314 + +0.8
1,053,314 + -0.2
1,053,314 + -0.6
1,053,314 + -0.0
1,053,315 - -1.8
1,053,315 - -1.3
1,053,407 + -0.3
1,053,416 + -0.2
1,053,416 + +0.3
1,053,437 + -0.1
1,053,529 + +0.0
1,053,626 + -0.4
1,053,646 - +0.9
1,053,741 - +1.0
1,053,758 - +0.4

Or see this region's nucleotide sequence