Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_898 and Pf6N2E2_899 are separated by 449 nucleotides
Pf6N2E2_898 - putative major facilitator superfamily (MFS) transporter, at 1,050,876 to 1,052,195
_898
Pf6N2E2_899 - hypothetical protein, at 1,052,645 to 1,052,776
_899
Position (kb)
1052
1053 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1051.888 kb on + strand, within Pf6N2E2_898 at 1051.889 kb on - strand, within Pf6N2E2_898 at 1052.046 kb on + strand, within Pf6N2E2_898 at 1052.047 kb on - strand, within Pf6N2E2_898 at 1052.116 kb on + strand at 1052.117 kb on - strand at 1052.222 kb on + strand at 1052.284 kb on + strand at 1052.284 kb on + strand at 1052.284 kb on + strand at 1052.284 kb on + strand at 1052.285 kb on - strand at 1052.306 kb on + strand at 1052.306 kb on + strand at 1052.307 kb on - strand at 1052.307 kb on - strand at 1052.307 kb on - strand at 1052.307 kb on - strand at 1052.307 kb on - strand at 1052.307 kb on - strand at 1052.308 kb on + strand at 1052.309 kb on - strand at 1052.395 kb on - strand at 1052.395 kb on - strand at 1052.418 kb on - strand at 1052.505 kb on + strand at 1052.506 kb on - strand at 1052.531 kb on + strand at 1052.532 kb on - strand at 1052.559 kb on - strand at 1052.581 kb on - strand at 1052.630 kb on + strand at 1052.630 kb on + strand at 1052.630 kb on + strand at 1052.630 kb on + strand at 1052.630 kb on + strand at 1052.631 kb on - strand at 1052.631 kb on - strand at 1052.631 kb on - strand at 1052.639 kb on - strand at 1052.639 kb on - strand at 1052.657 kb on + strand at 1052.657 kb on + strand at 1052.658 kb on - strand at 1052.725 kb on + strand, within Pf6N2E2_899 at 1052.790 kb on - strand at 1052.814 kb on - strand at 1052.853 kb on + strand at 1052.854 kb on - strand at 1052.854 kb on - strand at 1052.882 kb on + strand at 1052.969 kb on + strand at 1052.969 kb on + strand at 1052.970 kb on - strand at 1053.061 kb on + strand at 1053.062 kb on - strand at 1053.062 kb on - strand at 1053.080 kb on + strand at 1053.080 kb on + strand at 1053.081 kb on - strand at 1053.081 kb on - strand at 1053.083 kb on + strand at 1053.083 kb on + strand at 1053.083 kb on + strand at 1053.083 kb on + strand at 1053.083 kb on + strand at 1053.097 kb on + strand at 1053.097 kb on + strand at 1053.097 kb on + strand at 1053.097 kb on + strand at 1053.097 kb on + strand at 1053.098 kb on - strand at 1053.115 kb on + strand at 1053.115 kb on + strand at 1053.115 kb on + strand at 1053.115 kb on + strand at 1053.115 kb on + strand at 1053.116 kb on - strand at 1053.122 kb on + strand at 1053.209 kb on + strand at 1053.209 kb on + strand at 1053.210 kb on - strand at 1053.314 kb on + strand at 1053.314 kb on + strand at 1053.314 kb on + strand at 1053.314 kb on + strand at 1053.315 kb on - strand at 1053.315 kb on - strand at 1053.407 kb on + strand at 1053.416 kb on + strand at 1053.416 kb on + strand at 1053.437 kb on + strand at 1053.529 kb on + strand at 1053.626 kb on + strand at 1053.646 kb on - strand at 1053.741 kb on - strand at 1053.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 1,051,888 + Pf6N2E2_898 0.77 +0.5 1,051,889 - Pf6N2E2_898 0.77 -0.8 1,052,046 + Pf6N2E2_898 0.89 +0.0 1,052,047 - Pf6N2E2_898 0.89 -0.2 1,052,116 + -0.0 1,052,117 - +1.1 1,052,222 + +0.7 1,052,284 + -1.9 1,052,284 + -0.8 1,052,284 + +3.0 1,052,284 + -0.3 1,052,285 - +0.3 1,052,306 + +0.5 1,052,306 + +0.6 1,052,307 - -0.4 1,052,307 - -0.3 1,052,307 - +0.4 1,052,307 - +0.4 1,052,307 - -0.1 1,052,307 - +0.3 1,052,308 + -1.1 1,052,309 - +0.5 1,052,395 - +0.3 1,052,395 - -0.4 1,052,418 - -0.9 1,052,505 + +0.4 1,052,506 - +0.2 1,052,531 + -2.6 1,052,532 - -0.6 1,052,559 - +0.1 1,052,581 - +0.5 1,052,630 + -2.0 1,052,630 + -0.9 1,052,630 + +2.6 1,052,630 + -0.8 1,052,630 + +1.4 1,052,631 - +1.4 1,052,631 - -1.6 1,052,631 - +1.0 1,052,639 - -0.8 1,052,639 - -0.6 1,052,657 + +0.6 1,052,657 + +0.4 1,052,658 - +0.1 1,052,725 + Pf6N2E2_899 0.61 +0.3 1,052,790 - +0.2 1,052,814 - +0.1 1,052,853 + +0.3 1,052,854 - -0.9 1,052,854 - +0.2 1,052,882 + +1.0 1,052,969 + +0.0 1,052,969 + -0.6 1,052,970 - +0.1 1,053,061 + +0.3 1,053,062 - -1.0 1,053,062 - +0.9 1,053,080 + +0.0 1,053,080 + +0.0 1,053,081 - +0.3 1,053,081 - -0.3 1,053,083 + -1.1 1,053,083 + -0.5 1,053,083 + -0.6 1,053,083 + -1.2 1,053,083 + -0.1 1,053,097 + +0.3 1,053,097 + -0.3 1,053,097 + -1.4 1,053,097 + -0.5 1,053,097 + -0.8 1,053,098 - -2.0 1,053,115 + -0.4 1,053,115 + -0.6 1,053,115 + -0.4 1,053,115 + -0.3 1,053,115 + +0.0 1,053,116 - +1.0 1,053,122 + +0.1 1,053,209 + -0.8 1,053,209 + +0.4 1,053,210 - -0.7 1,053,314 + +0.8 1,053,314 + -0.2 1,053,314 + -0.6 1,053,314 + -0.0 1,053,315 - -1.8 1,053,315 - -1.3 1,053,407 + -0.3 1,053,416 + -0.2 1,053,416 + +0.3 1,053,437 + -0.1 1,053,529 + +0.0 1,053,626 + -0.4 1,053,646 - +0.9 1,053,741 - +1.0 1,053,758 - +0.4
Or see this region's nucleotide sequence