Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_741

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_740 and Pf6N2E2_741 are separated by 200 nucleotidesPf6N2E2_741 and Pf6N2E2_742 are separated by 213 nucleotides Pf6N2E2_740 - Phenylacetic acid-specific porin; hydroxycinnamate specific porine, at 849,570 to 850,877 _740 Pf6N2E2_741 - Transcriptional regulator, MarR family, at 851,078 to 851,566 _741 Pf6N2E2_742 - 4-hydroxycinnamoyl CoA hydratase/lyase (Enoyl-CoA hydratase/lyase) (EC 4.2.1.17), at 851,780 to 852,610 _742 Position (kb) 851 852Strain fitness (log2 ratio) -2 -1 0 1 2at 850.120 kb on - strand, within Pf6N2E2_740at 850.224 kb on + strand, within Pf6N2E2_740at 850.225 kb on - strand, within Pf6N2E2_740at 850.225 kb on - strand, within Pf6N2E2_740at 850.225 kb on - strand, within Pf6N2E2_740at 850.272 kb on + strand, within Pf6N2E2_740at 850.297 kb on - strand, within Pf6N2E2_740at 850.297 kb on - strand, within Pf6N2E2_740at 850.297 kb on - strand, within Pf6N2E2_740at 850.297 kb on - strand, within Pf6N2E2_740at 850.476 kb on + strand, within Pf6N2E2_740at 850.476 kb on + strand, within Pf6N2E2_740at 850.476 kb on + strand, within Pf6N2E2_740at 850.477 kb on - strand, within Pf6N2E2_740at 850.477 kb on - strand, within Pf6N2E2_740at 850.509 kb on + strand, within Pf6N2E2_740at 850.509 kb on + strand, within Pf6N2E2_740at 850.509 kb on + strand, within Pf6N2E2_740at 850.509 kb on + strand, within Pf6N2E2_740at 850.509 kb on + strand, within Pf6N2E2_740at 850.509 kb on + strand, within Pf6N2E2_740at 850.510 kb on - strand, within Pf6N2E2_740at 850.510 kb on - strand, within Pf6N2E2_740at 850.606 kb on - strand, within Pf6N2E2_740at 850.606 kb on - strand, within Pf6N2E2_740at 850.653 kb on + strand, within Pf6N2E2_740at 850.653 kb on + strand, within Pf6N2E2_740at 850.653 kb on + strand, within Pf6N2E2_740at 850.653 kb on + strand, within Pf6N2E2_740at 850.734 kb on + strand, within Pf6N2E2_740at 850.734 kb on + strand, within Pf6N2E2_740at 850.735 kb on - strand, within Pf6N2E2_740at 850.791 kb on + strandat 850.792 kb on - strandat 850.857 kb on + strandat 850.857 kb on + strandat 850.857 kb on + strandat 850.857 kb on + strandat 850.858 kb on - strandat 850.858 kb on - strandat 850.920 kb on + strandat 850.920 kb on + strandat 850.920 kb on + strandat 850.920 kb on + strandat 850.920 kb on + strandat 850.920 kb on + strandat 850.921 kb on - strandat 850.945 kb on + strandat 850.945 kb on + strandat 850.992 kb on + strandat 850.999 kb on + strandat 850.999 kb on + strandat 850.999 kb on + strandat 850.999 kb on + strandat 851.029 kb on + strandat 851.030 kb on - strandat 851.030 kb on - strandat 851.030 kb on - strandat 851.048 kb on - strandat 851.048 kb on - strandat 851.048 kb on - strandat 851.079 kb on + strandat 851.080 kb on - strandat 851.080 kb on - strandat 851.080 kb on - strandat 851.080 kb on - strandat 851.088 kb on + strandat 851.089 kb on - strandat 851.226 kb on + strand, within Pf6N2E2_741at 851.587 kb on + strandat 851.587 kb on + strandat 851.587 kb on + strandat 851.588 kb on - strandat 851.663 kb on + strandat 851.663 kb on + strandat 851.663 kb on + strandat 851.663 kb on + strandat 851.663 kb on + strandat 851.663 kb on + strandat 851.664 kb on - strandat 851.664 kb on - strandat 851.695 kb on + strandat 851.737 kb on + strandat 851.789 kb on + strandat 851.790 kb on - strandat 851.790 kb on - strandat 851.947 kb on - strand, within Pf6N2E2_742at 852.002 kb on + strand, within Pf6N2E2_742at 852.003 kb on - strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.092 kb on + strand, within Pf6N2E2_742at 852.093 kb on - strand, within Pf6N2E2_742at 852.093 kb on - strand, within Pf6N2E2_742at 852.093 kb on - strand, within Pf6N2E2_742at 852.284 kb on + strand, within Pf6N2E2_742at 852.284 kb on + strandat 852.284 kb on + strand, within Pf6N2E2_742at 852.285 kb on - strand, within Pf6N2E2_742at 852.285 kb on - strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.287 kb on + strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.288 kb on - strand, within Pf6N2E2_742at 852.488 kb on + strand, within Pf6N2E2_742at 852.488 kb on + strand, within Pf6N2E2_742at 852.489 kb on - strand, within Pf6N2E2_742at 852.489 kb on - strand, within Pf6N2E2_742

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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850,120 - Pf6N2E2_740 0.42 +0.6
850,224 + Pf6N2E2_740 0.50 +2.0
850,225 - Pf6N2E2_740 0.50 +0.6
850,225 - Pf6N2E2_740 0.50 -0.5
850,225 - Pf6N2E2_740 0.50 -0.2
850,272 + Pf6N2E2_740 0.54 -0.7
850,297 - Pf6N2E2_740 0.56 +0.8
850,297 - Pf6N2E2_740 0.56 -0.3
850,297 - Pf6N2E2_740 0.56 -0.3
850,297 - Pf6N2E2_740 0.56 +1.0
850,476 + Pf6N2E2_740 0.69 -0.1
850,476 + Pf6N2E2_740 0.69 +0.1
850,476 + Pf6N2E2_740 0.69 -0.6
850,477 - Pf6N2E2_740 0.69 -0.2
850,477 - Pf6N2E2_740 0.69 -0.9
850,509 + Pf6N2E2_740 0.72 +1.8
850,509 + Pf6N2E2_740 0.72 -1.8
850,509 + Pf6N2E2_740 0.72 -1.6
850,509 + Pf6N2E2_740 0.72 -0.0
850,509 + Pf6N2E2_740 0.72 -0.3
850,509 + Pf6N2E2_740 0.72 -0.2
850,510 - Pf6N2E2_740 0.72 -0.6
850,510 - Pf6N2E2_740 0.72 +0.0
850,606 - Pf6N2E2_740 0.79 +0.8
850,606 - Pf6N2E2_740 0.79 -0.3
850,653 + Pf6N2E2_740 0.83 -0.8
850,653 + Pf6N2E2_740 0.83 -0.1
850,653 + Pf6N2E2_740 0.83 +1.0
850,653 + Pf6N2E2_740 0.83 +0.2
850,734 + Pf6N2E2_740 0.89 -0.0
850,734 + Pf6N2E2_740 0.89 -2.3
850,735 - Pf6N2E2_740 0.89 +0.1
850,791 + -0.2
850,792 - -0.4
850,857 + -0.6
850,857 + -1.0
850,857 + +0.5
850,857 + -0.1
850,858 - +1.0
850,858 - -0.8
850,920 + -0.5
850,920 + +0.1
850,920 + -1.8
850,920 + -0.0
850,920 + +0.1
850,920 + +0.3
850,921 - +0.0
850,945 + -0.2
850,945 + +0.9
850,992 + +0.1
850,999 + +0.2
850,999 + +0.9
850,999 + -0.1
850,999 + -0.8
851,029 + +0.8
851,030 - +0.0
851,030 - +0.7
851,030 - -1.1
851,048 - +0.7
851,048 - -0.3
851,048 - +0.6
851,079 + +1.3
851,080 - -1.0
851,080 - +0.1
851,080 - -0.7
851,080 - +0.5
851,088 + -0.4
851,089 - -0.6
851,226 + Pf6N2E2_741 0.30 -1.3
851,587 + -2.4
851,587 + +0.4
851,587 + +0.3
851,588 - -0.0
851,663 + -0.4
851,663 + -0.5
851,663 + -0.7
851,663 + +0.9
851,663 + -1.3
851,663 + -0.3
851,664 - +0.5
851,664 - +0.4
851,695 + -0.2
851,737 + +0.4
851,789 + -0.5
851,790 - -1.1
851,790 - -0.6
851,947 - Pf6N2E2_742 0.20 -1.0
852,002 + Pf6N2E2_742 0.27 -0.7
852,003 - Pf6N2E2_742 0.27 -0.2
852,092 + Pf6N2E2_742 0.38 +0.8
852,092 + Pf6N2E2_742 0.38 -0.5
852,092 + Pf6N2E2_742 0.38 -0.0
852,092 + Pf6N2E2_742 0.38 +0.3
852,093 - Pf6N2E2_742 0.38 -0.9
852,093 - Pf6N2E2_742 0.38 +0.4
852,093 - Pf6N2E2_742 0.38 +0.7
852,284 + Pf6N2E2_742 0.61 +0.2
852,284 + +1.0
852,284 + Pf6N2E2_742 0.61 +0.8
852,285 - Pf6N2E2_742 0.61 +0.9
852,285 - Pf6N2E2_742 0.61 +0.2
852,287 + Pf6N2E2_742 0.61 +0.3
852,287 + Pf6N2E2_742 0.61 +0.1
852,287 + Pf6N2E2_742 0.61 +0.1
852,287 + Pf6N2E2_742 0.61 +0.0
852,287 + Pf6N2E2_742 0.61 -0.3
852,288 - Pf6N2E2_742 0.61 +0.4
852,288 - Pf6N2E2_742 0.61 +0.6
852,288 - Pf6N2E2_742 0.61 +1.0
852,288 - Pf6N2E2_742 0.61 +1.1
852,288 - Pf6N2E2_742 0.61 +0.1
852,288 - Pf6N2E2_742 0.61 +0.1
852,288 - Pf6N2E2_742 0.61 +0.6
852,488 + Pf6N2E2_742 0.85 +0.8
852,488 + Pf6N2E2_742 0.85 -0.7
852,489 - Pf6N2E2_742 0.85 -0.4
852,489 - Pf6N2E2_742 0.85 +0.0

Or see this region's nucleotide sequence