Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_679

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_678 and Pf6N2E2_679 overlap by 4 nucleotidesPf6N2E2_679 and Pf6N2E2_680 are separated by 191 nucleotides Pf6N2E2_678 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 783,039 to 784,295 _678 Pf6N2E2_679 - Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain, at 784,292 to 784,528 _679 Pf6N2E2_680 - D-amino-acid oxidase (EC 1.4.3.3), at 784,720 to 785,835 _680 Position (kb) 784 785Strain fitness (log2 ratio) -1 0 1 2at 783.466 kb on + strand, within Pf6N2E2_678at 783.466 kb on + strand, within Pf6N2E2_678at 783.546 kb on + strand, within Pf6N2E2_678at 783.546 kb on + strand, within Pf6N2E2_678at 783.622 kb on + strand, within Pf6N2E2_678at 783.623 kb on - strand, within Pf6N2E2_678at 784.000 kb on + strand, within Pf6N2E2_678at 784.001 kb on - strand, within Pf6N2E2_678at 784.047 kb on - strand, within Pf6N2E2_678at 784.089 kb on + strand, within Pf6N2E2_678at 784.089 kb on + strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.387 kb on + strand, within Pf6N2E2_679at 784.387 kb on + strand, within Pf6N2E2_679at 784.517 kb on + strandat 784.518 kb on - strandat 784.760 kb on + strandat 784.760 kb on + strandat 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.094 kb on + strand, within Pf6N2E2_680at 785.094 kb on + strand, within Pf6N2E2_680at 785.095 kb on - strand, within Pf6N2E2_680at 785.095 kb on - strand, within Pf6N2E2_680at 785.142 kb on - strand, within Pf6N2E2_680at 785.142 kb on - strand, within Pf6N2E2_680at 785.397 kb on - strand, within Pf6N2E2_680at 785.522 kb on + strand, within Pf6N2E2_680at 785.522 kb on + strand, within Pf6N2E2_680at 785.523 kb on - strand, within Pf6N2E2_680

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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783,466 + Pf6N2E2_678 0.34 -0.4
783,466 + Pf6N2E2_678 0.34 -0.8
783,546 + Pf6N2E2_678 0.40 +1.4
783,546 + Pf6N2E2_678 0.40 +0.2
783,622 + Pf6N2E2_678 0.46 +0.1
783,623 - Pf6N2E2_678 0.46 +0.6
784,000 + Pf6N2E2_678 0.76 -0.0
784,001 - Pf6N2E2_678 0.77 +2.0
784,047 - Pf6N2E2_678 0.80 +0.1
784,089 + Pf6N2E2_678 0.84 -1.7
784,089 + Pf6N2E2_678 0.84 +0.8
784,090 - Pf6N2E2_678 0.84 -0.2
784,090 - Pf6N2E2_678 0.84 +0.5
784,090 - Pf6N2E2_678 0.84 -0.5
784,090 - Pf6N2E2_678 0.84 -0.2
784,387 + Pf6N2E2_679 0.40 -0.9
784,387 + Pf6N2E2_679 0.40 +0.3
784,517 + +0.2
784,518 - -0.7
784,760 + +0.1
784,760 + -0.2
785,092 + Pf6N2E2_680 0.33 -0.9
785,092 + Pf6N2E2_680 0.33 -0.4
785,092 + Pf6N2E2_680 0.33 -0.7
785,092 + Pf6N2E2_680 0.33 +0.9
785,092 + Pf6N2E2_680 0.33 +0.6
785,093 - Pf6N2E2_680 0.33 +0.2
785,093 - Pf6N2E2_680 0.33 +0.1
785,093 - Pf6N2E2_680 0.33 -1.0
785,093 - Pf6N2E2_680 0.33 -0.7
785,093 - Pf6N2E2_680 0.33 +0.7
785,093 - Pf6N2E2_680 0.33 +0.1
785,093 - Pf6N2E2_680 0.33 -0.3
785,094 + Pf6N2E2_680 0.34 +0.2
785,094 + Pf6N2E2_680 0.34 +0.8
785,095 - Pf6N2E2_680 0.34 -0.2
785,095 - Pf6N2E2_680 0.34 +0.9
785,142 - Pf6N2E2_680 0.38 +0.5
785,142 - Pf6N2E2_680 0.38 +0.0
785,397 - Pf6N2E2_680 0.61 -1.6
785,522 + Pf6N2E2_680 0.72 -0.7
785,522 + Pf6N2E2_680 0.72 -0.2
785,523 - Pf6N2E2_680 0.72 +1.3

Or see this region's nucleotide sequence