Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4842 and Pf6N2E2_4843 are separated by 8 nucleotides Pf6N2E2_4843 and Pf6N2E2_6142 are separated by 142 nucleotides Pf6N2E2_6142 and Pf6N2E2_6143 are separated by 27 nucleotides Pf6N2E2_6143 and Pf6N2E2_6144 are separated by 29 nucleotides Pf6N2E2_6144 and Pf6N2E2_4844 are separated by 87 nucleotides
Pf6N2E2_4842 - Pantothenate kinase type III, CoaX-like (EC 2.7.1.33), at 5,600,783 to 5,601,532
_4842
Pf6N2E2_4843 - FIG00956941: hypothetical protein, at 5,601,541 to 5,601,996
_4843
Pf6N2E2_6142 - tRNA-Tyr-GTA, at 5,602,139 to 5,602,220
_6142
Pf6N2E2_6143 - tRNA-Gly-TCC, at 5,602,248 to 5,602,318
_6143
Pf6N2E2_6144 - tRNA-Thr-GGT, at 5,602,348 to 5,602,420
_6144
Pf6N2E2_4844 - Translation elongation factor Tu, at 5,602,508 to 5,603,701
_4844
Position (kb)
5602
5603 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5601.540 kb on + strand at 5601.540 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.583 kb on + strand at 5601.584 kb on - strand at 5601.584 kb on - strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.586 kb on + strand at 5601.587 kb on - strand, within Pf6N2E2_4843 at 5601.587 kb on - strand, within Pf6N2E2_4843 at 5601.646 kb on + strand, within Pf6N2E2_4843 at 5601.646 kb on + strand, within Pf6N2E2_4843 at 5601.718 kb on - strand, within Pf6N2E2_4843 at 5601.748 kb on + strand, within Pf6N2E2_4843 at 5601.748 kb on + strand, within Pf6N2E2_4843 at 5601.749 kb on - strand, within Pf6N2E2_4843 at 5601.818 kb on + strand, within Pf6N2E2_4843 at 5601.818 kb on + strand, within Pf6N2E2_4843 at 5601.933 kb on + strand, within Pf6N2E2_4843 at 5602.003 kb on + strand at 5602.426 kb on + strand at 5602.426 kb on + strand at 5602.426 kb on + strand at 5602.438 kb on + strand at 5602.438 kb on + strand at 5602.446 kb on + strand at 5602.446 kb on + strand at 5602.446 kb on + strand at 5602.446 kb on + strand at 5602.461 kb on + strand at 5602.461 kb on + strand at 5602.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,601,540 + +0.3 5,601,540 + -0.4 5,601,583 + -0.0 5,601,583 + +0.4 5,601,583 + +0.6 5,601,583 + +0.3 5,601,583 + -1.0 5,601,583 + +0.5 5,601,584 - +0.2 5,601,584 - -0.6 5,601,586 + +0.2 5,601,586 + -0.1 5,601,586 + -0.1 5,601,586 + +0.2 5,601,586 + +0.1 5,601,586 + +1.8 5,601,587 - Pf6N2E2_4843 0.10 -1.7 5,601,587 - Pf6N2E2_4843 0.10 -1.6 5,601,646 + Pf6N2E2_4843 0.23 -2.5 5,601,646 + Pf6N2E2_4843 0.23 +0.7 5,601,718 - Pf6N2E2_4843 0.39 +1.4 5,601,748 + Pf6N2E2_4843 0.45 +1.0 5,601,748 + Pf6N2E2_4843 0.45 +1.0 5,601,749 - Pf6N2E2_4843 0.46 +0.5 5,601,818 + Pf6N2E2_4843 0.61 +0.6 5,601,818 + Pf6N2E2_4843 0.61 -0.7 5,601,933 + Pf6N2E2_4843 0.86 -0.5 5,602,003 + -0.8 5,602,426 + -1.6 5,602,426 + -0.7 5,602,426 + +1.7 5,602,438 + -0.2 5,602,438 + -1.2 5,602,446 + +1.5 5,602,446 + +0.0 5,602,446 + +0.1 5,602,446 + -0.4 5,602,461 + +0.6 5,602,461 + +0.3 5,602,461 + -1.0
Or see this region's nucleotide sequence