Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5957

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5956 and Pf6N2E2_5957 are separated by 19 nucleotidesPf6N2E2_5957 and Pf6N2E2_5958 overlap by 8 nucleotides Pf6N2E2_5956 - FIG004453: protein YceG like, at 6,775,253 to 6,776,398 _5956 Pf6N2E2_5957 - Thymidylate kinase (EC 2.7.4.9), at 6,776,418 to 6,777,050 _5957 Pf6N2E2_5958 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 6,777,043 to 6,778,029 _5958 Position (kb) 6776 6777 6778Strain fitness (log2 ratio) -2 -1 0 1at 6775.454 kb on + strand, within Pf6N2E2_5956at 6775.454 kb on + strand, within Pf6N2E2_5956at 6775.568 kb on + strand, within Pf6N2E2_5956at 6775.729 kb on + strand, within Pf6N2E2_5956at 6775.733 kb on + strand, within Pf6N2E2_5956at 6775.733 kb on + strand, within Pf6N2E2_5956at 6775.733 kb on + strand, within Pf6N2E2_5956at 6775.841 kb on + strand, within Pf6N2E2_5956at 6775.841 kb on + strand, within Pf6N2E2_5956at 6775.843 kb on + strand, within Pf6N2E2_5956at 6775.843 kb on + strand, within Pf6N2E2_5956at 6775.985 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.150 kb on + strand, within Pf6N2E2_5956at 6776.406 kb on + strandat 6777.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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6,775,454 + Pf6N2E2_5956 0.18 +0.2
6,775,454 + Pf6N2E2_5956 0.18 -0.2
6,775,568 + Pf6N2E2_5956 0.27 -0.2
6,775,729 + Pf6N2E2_5956 0.42 +0.4
6,775,733 + Pf6N2E2_5956 0.42 +0.5
6,775,733 + Pf6N2E2_5956 0.42 +0.4
6,775,733 + Pf6N2E2_5956 0.42 -0.8
6,775,841 + Pf6N2E2_5956 0.51 -1.3
6,775,841 + Pf6N2E2_5956 0.51 -0.4
6,775,843 + Pf6N2E2_5956 0.51 -1.8
6,775,843 + Pf6N2E2_5956 0.51 -0.2
6,775,985 + Pf6N2E2_5956 0.64 +0.6
6,776,057 + Pf6N2E2_5956 0.70 -0.1
6,776,057 + Pf6N2E2_5956 0.70 +0.4
6,776,057 + Pf6N2E2_5956 0.70 -0.5
6,776,057 + Pf6N2E2_5956 0.70 +1.1
6,776,150 + Pf6N2E2_5956 0.78 -0.3
6,776,406 + -1.4
6,777,055 + +0.1

Or see this region's nucleotide sequence