Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5951 and Pf6N2E2_5952 are separated by 15 nucleotides Pf6N2E2_5952 and Pf6N2E2_5953 are separated by 191 nucleotides Pf6N2E2_5953 and Pf6N2E2_5954 are separated by 144 nucleotides
Pf6N2E2_5951 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 6,770,995 to 6,771,879
_5951
Pf6N2E2_5952 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 6,771,895 to 6,772,638
_5952
Pf6N2E2_5953 - Acyl carrier protein, at 6,772,830 to 6,773,066
_5953
Pf6N2E2_5954 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 6,773,211 to 6,774,419
_5954
Position (kb)
6771
6772
6773 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.627 kb on + strand at 6772.668 kb on + strand at 6772.668 kb on + strand at 6772.691 kb on + strand at 6772.772 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 6,772,627 + +0.3 6,772,627 + +0.6 6,772,627 + +0.2 6,772,627 + +0.4 6,772,627 + -0.5 6,772,627 + +0.7 6,772,627 + -3.2 6,772,627 + -0.7 6,772,627 + +1.1 6,772,627 + +0.2 6,772,627 + -0.8 6,772,668 + +0.1 6,772,668 + -0.3 6,772,691 + -0.5 6,772,772 + -0.5
Or see this region's nucleotide sequence