Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5952

Experiment: RCH2_defined

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5951 and Pf6N2E2_5952 are separated by 15 nucleotidesPf6N2E2_5952 and Pf6N2E2_5953 are separated by 191 nucleotidesPf6N2E2_5953 and Pf6N2E2_5954 are separated by 144 nucleotides Pf6N2E2_5951 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 6,770,995 to 6,771,879 _5951 Pf6N2E2_5952 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 6,771,895 to 6,772,638 _5952 Pf6N2E2_5953 - Acyl carrier protein, at 6,772,830 to 6,773,066 _5953 Pf6N2E2_5954 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 6,773,211 to 6,774,419 _5954 Position (kb) 6771 6772 6773Strain fitness (log2 ratio) -3 -2 -1 0 1at 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.627 kb on + strandat 6772.668 kb on + strandat 6772.668 kb on + strandat 6772.691 kb on + strandat 6772.772 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
remove
6,772,627 + +0.3
6,772,627 + +0.6
6,772,627 + +0.2
6,772,627 + +0.4
6,772,627 + -0.5
6,772,627 + +0.7
6,772,627 + -3.2
6,772,627 + -0.7
6,772,627 + +1.1
6,772,627 + +0.2
6,772,627 + -0.8
6,772,668 + +0.1
6,772,668 + -0.3
6,772,691 + -0.5
6,772,772 + -0.5

Or see this region's nucleotide sequence