Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5931 and Pf6N2E2_5932 overlap by 4 nucleotides Pf6N2E2_5932 and Pf6N2E2_5933 overlap by 1 nucleotides Pf6N2E2_5933 and Pf6N2E2_5934 are separated by 23 nucleotides Pf6N2E2_5934 and Pf6N2E2_5935 overlap by 4 nucleotides Pf6N2E2_5935 and Pf6N2E2_5936 overlap by 1 nucleotides
Pf6N2E2_5931 - MotA/TolQ/ExbB proton channel family protein, at 6,752,353 to 6,752,988
_5931
Pf6N2E2_5932 - Biopolymer transport protein ExbD/TolR, at 6,752,985 to 6,753,413
_5932
Pf6N2E2_5933 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 6,753,413 to 6,754,423
_5933
Pf6N2E2_5934 - FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster, at 6,754,447 to 6,754,632
_5934
Pf6N2E2_5935 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 6,754,629 to 6,755,393
_5935
Pf6N2E2_5936 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 6,755,393 to 6,755,857
_5936
Position (kb) 6753
6754
6755 Strain fitness (log2 ratio) -1
0
1 at 6752.670 kb on + strand, within Pf6N2E2_5931 at 6752.670 kb on + strand, within Pf6N2E2_5931 at 6754.421 kb on + strand at 6754.431 kb on + strand at 6755.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 6,752,670 + Pf6N2E2_5931 0.50 -0.5 6,752,670 + Pf6N2E2_5931 0.50 -0.1 6,754,421 + -0.5 6,754,431 + +1.7 6,755,422 + +0.1
Or see this region's nucleotide sequence