Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5930 and Pf6N2E2_5931 are separated by 95 nucleotides Pf6N2E2_5931 and Pf6N2E2_5932 overlap by 4 nucleotides Pf6N2E2_5932 and Pf6N2E2_5933 overlap by 1 nucleotides
Pf6N2E2_5930 - Predicted hydrolase of the metallo-beta-lactamase superfamily, clustered with KDO2-Lipid A biosynthesis genes, at 6,750,011 to 6,752,257
_5930
Pf6N2E2_5931 - MotA/TolQ/ExbB proton channel family protein, at 6,752,353 to 6,752,988
_5931
Pf6N2E2_5932 - Biopolymer transport protein ExbD/TolR, at 6,752,985 to 6,753,413
_5932
Pf6N2E2_5933 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 6,753,413 to 6,754,423
_5933
Position (kb)
6752
6753 Strain fitness (log2 ratio)
-1
0
1 at 6751.419 kb on + strand, within Pf6N2E2_5930 at 6751.419 kb on + strand, within Pf6N2E2_5930 at 6751.420 kb on - strand, within Pf6N2E2_5930 at 6751.449 kb on + strand, within Pf6N2E2_5930 at 6751.449 kb on + strand, within Pf6N2E2_5930 at 6751.450 kb on - strand, within Pf6N2E2_5930 at 6751.556 kb on + strand, within Pf6N2E2_5930 at 6751.557 kb on - strand, within Pf6N2E2_5930 at 6752.130 kb on + strand at 6752.131 kb on - strand at 6752.132 kb on + strand at 6752.132 kb on + strand at 6752.132 kb on + strand at 6752.132 kb on + strand at 6752.132 kb on + strand at 6752.132 kb on + strand at 6752.132 kb on + strand at 6752.132 kb on + strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.133 kb on - strand at 6752.253 kb on - strand at 6752.670 kb on + strand, within Pf6N2E2_5931 at 6752.670 kb on + strand, within Pf6N2E2_5931
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 6,751,419 + Pf6N2E2_5930 0.63 -0.6 6,751,419 + Pf6N2E2_5930 0.63 +0.2 6,751,420 - Pf6N2E2_5930 0.63 -0.2 6,751,449 + Pf6N2E2_5930 0.64 +0.4 6,751,449 + Pf6N2E2_5930 0.64 +1.3 6,751,450 - Pf6N2E2_5930 0.64 +0.2 6,751,556 + Pf6N2E2_5930 0.69 -0.5 6,751,557 - Pf6N2E2_5930 0.69 +0.0 6,752,130 + +0.8 6,752,131 - +0.6 6,752,132 + -0.6 6,752,132 + +0.8 6,752,132 + -0.2 6,752,132 + -0.3 6,752,132 + +0.3 6,752,132 + +0.4 6,752,132 + -0.1 6,752,132 + -0.1 6,752,133 - +0.1 6,752,133 - -0.3 6,752,133 - +0.6 6,752,133 - -0.5 6,752,133 - -0.2 6,752,133 - +1.1 6,752,133 - +0.5 6,752,133 - +0.8 6,752,133 - -0.4 6,752,253 - +0.9 6,752,670 + Pf6N2E2_5931 0.50 -0.5 6,752,670 + Pf6N2E2_5931 0.50 -0.1
Or see this region's nucleotide sequence