Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5931

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5930 and Pf6N2E2_5931 are separated by 95 nucleotidesPf6N2E2_5931 and Pf6N2E2_5932 overlap by 4 nucleotidesPf6N2E2_5932 and Pf6N2E2_5933 overlap by 1 nucleotides Pf6N2E2_5930 - Predicted hydrolase of the metallo-beta-lactamase superfamily, clustered with KDO2-Lipid A biosynthesis genes, at 6,750,011 to 6,752,257 _5930 Pf6N2E2_5931 - MotA/TolQ/ExbB proton channel family protein, at 6,752,353 to 6,752,988 _5931 Pf6N2E2_5932 - Biopolymer transport protein ExbD/TolR, at 6,752,985 to 6,753,413 _5932 Pf6N2E2_5933 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 6,753,413 to 6,754,423 _5933 Position (kb) 6752 6753Strain fitness (log2 ratio) -1 0 1at 6751.419 kb on + strand, within Pf6N2E2_5930at 6751.419 kb on + strand, within Pf6N2E2_5930at 6751.420 kb on - strand, within Pf6N2E2_5930at 6751.449 kb on + strand, within Pf6N2E2_5930at 6751.449 kb on + strand, within Pf6N2E2_5930at 6751.450 kb on - strand, within Pf6N2E2_5930at 6751.556 kb on + strand, within Pf6N2E2_5930at 6751.557 kb on - strand, within Pf6N2E2_5930at 6752.130 kb on + strandat 6752.131 kb on - strandat 6752.132 kb on + strandat 6752.132 kb on + strandat 6752.132 kb on + strandat 6752.132 kb on + strandat 6752.132 kb on + strandat 6752.132 kb on + strandat 6752.132 kb on + strandat 6752.132 kb on + strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.133 kb on - strandat 6752.253 kb on - strandat 6752.670 kb on + strand, within Pf6N2E2_5931at 6752.670 kb on + strand, within Pf6N2E2_5931

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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6,751,419 + Pf6N2E2_5930 0.63 -0.6
6,751,419 + Pf6N2E2_5930 0.63 +0.2
6,751,420 - Pf6N2E2_5930 0.63 -0.2
6,751,449 + Pf6N2E2_5930 0.64 +0.4
6,751,449 + Pf6N2E2_5930 0.64 +1.3
6,751,450 - Pf6N2E2_5930 0.64 +0.2
6,751,556 + Pf6N2E2_5930 0.69 -0.5
6,751,557 - Pf6N2E2_5930 0.69 +0.0
6,752,130 + +0.8
6,752,131 - +0.6
6,752,132 + -0.6
6,752,132 + +0.8
6,752,132 + -0.2
6,752,132 + -0.3
6,752,132 + +0.3
6,752,132 + +0.4
6,752,132 + -0.1
6,752,132 + -0.1
6,752,133 - +0.1
6,752,133 - -0.3
6,752,133 - +0.6
6,752,133 - -0.5
6,752,133 - -0.2
6,752,133 - +1.1
6,752,133 - +0.5
6,752,133 - +0.8
6,752,133 - -0.4
6,752,253 - +0.9
6,752,670 + Pf6N2E2_5931 0.50 -0.5
6,752,670 + Pf6N2E2_5931 0.50 -0.1

Or see this region's nucleotide sequence