Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5514

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5513 and Pf6N2E2_5514 are separated by 137 nucleotidesPf6N2E2_5514 and Pf6N2E2_5515 are separated by 294 nucleotides Pf6N2E2_5513 - ATPase component BioM of energizing module of biotin ECF transporter, at 6,329,884 to 6,331,485 _5513 Pf6N2E2_5514 - Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives, at 6,331,623 to 6,332,078 _5514 Pf6N2E2_5515 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 6,332,373 to 6,335,108 _5515 Position (kb) 6331 6332 6333Strain fitness (log2 ratio) -1 0 1at 6330.901 kb on + strand, within Pf6N2E2_5513at 6330.902 kb on - strand, within Pf6N2E2_5513at 6331.231 kb on + strand, within Pf6N2E2_5513at 6331.231 kb on + strand, within Pf6N2E2_5513at 6331.232 kb on - strand, within Pf6N2E2_5513at 6331.232 kb on - strand, within Pf6N2E2_5513at 6331.232 kb on - strand, within Pf6N2E2_5513at 6331.261 kb on + strand, within Pf6N2E2_5513at 6331.261 kb on + strand, within Pf6N2E2_5513at 6331.261 kb on + strand, within Pf6N2E2_5513at 6331.262 kb on - strand, within Pf6N2E2_5513at 6331.262 kb on - strand, within Pf6N2E2_5513at 6331.262 kb on - strand, within Pf6N2E2_5513at 6331.392 kb on + strandat 6331.392 kb on + strandat 6331.392 kb on + strandat 6331.392 kb on + strandat 6331.392 kb on + strandat 6331.392 kb on + strandat 6331.393 kb on - strandat 6331.393 kb on - strandat 6331.543 kb on + strandat 6332.113 kb on - strandat 6332.166 kb on - strandat 6332.212 kb on + strandat 6332.212 kb on + strandat 6332.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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6,330,901 + Pf6N2E2_5513 0.63 -0.4
6,330,902 - Pf6N2E2_5513 0.64 +1.0
6,331,231 + Pf6N2E2_5513 0.84 -0.2
6,331,231 + Pf6N2E2_5513 0.84 +0.0
6,331,232 - Pf6N2E2_5513 0.84 +0.7
6,331,232 - Pf6N2E2_5513 0.84 -1.2
6,331,232 - Pf6N2E2_5513 0.84 +0.9
6,331,261 + Pf6N2E2_5513 0.86 -0.2
6,331,261 + Pf6N2E2_5513 0.86 +0.1
6,331,261 + Pf6N2E2_5513 0.86 +1.6
6,331,262 - Pf6N2E2_5513 0.86 -0.3
6,331,262 - Pf6N2E2_5513 0.86 +0.1
6,331,262 - Pf6N2E2_5513 0.86 +0.5
6,331,392 + +0.1
6,331,392 + -0.8
6,331,392 + +0.6
6,331,392 + -0.0
6,331,392 + +0.4
6,331,392 + +0.8
6,331,393 - -0.7
6,331,393 - -0.6
6,331,543 + +0.1
6,332,113 - +0.2
6,332,166 - -1.2
6,332,212 + -0.2
6,332,212 + -1.5
6,332,351 + -0.8

Or see this region's nucleotide sequence