Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5513 and Pf6N2E2_5514 are separated by 137 nucleotides Pf6N2E2_5514 and Pf6N2E2_5515 are separated by 294 nucleotides
Pf6N2E2_5513 - ATPase component BioM of energizing module of biotin ECF transporter, at 6,329,884 to 6,331,485
_5513
Pf6N2E2_5514 - Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives, at 6,331,623 to 6,332,078
_5514
Pf6N2E2_5515 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 6,332,373 to 6,335,108
_5515
Position (kb)
6331
6332
6333 Strain fitness (log2 ratio)
-1
0
1 at 6330.901 kb on + strand, within Pf6N2E2_5513 at 6330.902 kb on - strand, within Pf6N2E2_5513 at 6331.231 kb on + strand, within Pf6N2E2_5513 at 6331.231 kb on + strand, within Pf6N2E2_5513 at 6331.232 kb on - strand, within Pf6N2E2_5513 at 6331.232 kb on - strand, within Pf6N2E2_5513 at 6331.232 kb on - strand, within Pf6N2E2_5513 at 6331.261 kb on + strand, within Pf6N2E2_5513 at 6331.261 kb on + strand, within Pf6N2E2_5513 at 6331.261 kb on + strand, within Pf6N2E2_5513 at 6331.262 kb on - strand, within Pf6N2E2_5513 at 6331.262 kb on - strand, within Pf6N2E2_5513 at 6331.262 kb on - strand, within Pf6N2E2_5513 at 6331.392 kb on + strand at 6331.392 kb on + strand at 6331.392 kb on + strand at 6331.392 kb on + strand at 6331.392 kb on + strand at 6331.392 kb on + strand at 6331.393 kb on - strand at 6331.393 kb on - strand at 6331.543 kb on + strand at 6332.113 kb on - strand at 6332.166 kb on - strand at 6332.212 kb on + strand at 6332.212 kb on + strand at 6332.351 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 6,330,901 + Pf6N2E2_5513 0.63 -0.4 6,330,902 - Pf6N2E2_5513 0.64 +1.0 6,331,231 + Pf6N2E2_5513 0.84 -0.2 6,331,231 + Pf6N2E2_5513 0.84 +0.0 6,331,232 - Pf6N2E2_5513 0.84 +0.7 6,331,232 - Pf6N2E2_5513 0.84 -1.2 6,331,232 - Pf6N2E2_5513 0.84 +0.9 6,331,261 + Pf6N2E2_5513 0.86 -0.2 6,331,261 + Pf6N2E2_5513 0.86 +0.1 6,331,261 + Pf6N2E2_5513 0.86 +1.6 6,331,262 - Pf6N2E2_5513 0.86 -0.3 6,331,262 - Pf6N2E2_5513 0.86 +0.1 6,331,262 - Pf6N2E2_5513 0.86 +0.5 6,331,392 + +0.1 6,331,392 + -0.8 6,331,392 + +0.6 6,331,392 + -0.0 6,331,392 + +0.4 6,331,392 + +0.8 6,331,393 - -0.7 6,331,393 - -0.6 6,331,543 + +0.1 6,332,113 - +0.2 6,332,166 - -1.2 6,332,212 + -0.2 6,332,212 + -1.5 6,332,351 + -0.8
Or see this region's nucleotide sequence