Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5346 and Pf6N2E2_5347 are separated by 868 nucleotides Pf6N2E2_5347 and Pf6N2E2_5348 are separated by 119 nucleotides Pf6N2E2_5348 and Pf6N2E2_5349 overlap by 4 nucleotides
Pf6N2E2_5346 - rRNA small subunit methyltransferase I, at 6,140,216 to 6,141,088
_5346
Pf6N2E2_5347 - Cell division protein MraZ, at 6,141,957 to 6,142,280
_5347
Pf6N2E2_5348 - rRNA small subunit methyltransferase H, at 6,142,400 to 6,143,224
_5348
Pf6N2E2_5349 - Cell division protein FtsL, at 6,143,221 to 6,143,514
_5349
Position (kb)
6141
6142
6143 Strain fitness (log2 ratio)
-2
-1
0
1 at 6140.979 kb on + strand, within Pf6N2E2_5346 at 6140.980 kb on - strand, within Pf6N2E2_5346 at 6141.120 kb on - strand at 6141.558 kb on - strand at 6141.560 kb on + strand at 6141.561 kb on - strand at 6141.593 kb on + strand at 6141.693 kb on + strand at 6141.693 kb on + strand at 6141.744 kb on + strand at 6141.744 kb on + strand at 6141.744 kb on + strand at 6141.744 kb on + strand at 6141.744 kb on + strand at 6141.746 kb on + strand at 6141.925 kb on + strand at 6142.156 kb on + strand, within Pf6N2E2_5347
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 6,140,979 + Pf6N2E2_5346 0.87 -2.3 6,140,980 - Pf6N2E2_5346 0.88 +0.3 6,141,120 - +0.1 6,141,558 - +0.4 6,141,560 + +1.1 6,141,561 - +0.6 6,141,593 + +0.4 6,141,693 + -0.3 6,141,693 + +0.3 6,141,744 + -0.7 6,141,744 + -0.3 6,141,744 + -1.5 6,141,744 + -0.9 6,141,744 + -0.0 6,141,746 + -0.3 6,141,925 + -0.3 6,142,156 + Pf6N2E2_5347 0.61 +0.4
Or see this region's nucleotide sequence