Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5216 and Pf6N2E2_6156 are separated by 50 nucleotides Pf6N2E2_6156 and Pf6N2E2_5217 are separated by 37 nucleotides Pf6N2E2_5217 and Pf6N2E2_5218 are separated by 1 nucleotides Pf6N2E2_5218 and Pf6N2E2_5219 are separated by 4 nucleotides
Pf6N2E2_5216 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 6,014,160 to 6,015,101
_5216
Pf6N2E2_6156 - tRNA-Gln-TTG, at 6,015,152 to 6,015,223
_6156
Pf6N2E2_5217 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 6,015,261 to 6,016,112
_5217
Pf6N2E2_5218 - Outer membrane lipoprotein LolB precursor, at 6,016,114 to 6,016,731
_5218
Pf6N2E2_5219 - FIG140336: TPR domain protein, at 6,016,736 to 6,018,442
_5219
Position (kb)
6015
6016
6017 Strain fitness (log2 ratio)
-2
-1
0
1 at 6015.126 kb on - strand at 6015.128 kb on - strand at 6015.128 kb on - strand at 6015.128 kb on - strand at 6015.142 kb on - strand at 6016.738 kb on - strand at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219 at 6017.066 kb on - strand, within Pf6N2E2_5219
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 6,015,126 - -0.9 6,015,128 - -0.2 6,015,128 - +1.1 6,015,128 - -0.4 6,015,142 - -0.1 6,016,738 - +0.7 6,017,066 - Pf6N2E2_5219 0.19 -1.7 6,017,066 - Pf6N2E2_5219 0.19 -0.7 6,017,066 - Pf6N2E2_5219 0.19 +1.1 6,017,066 - Pf6N2E2_5219 0.19 -1.0 6,017,066 - Pf6N2E2_5219 0.19 +1.3 6,017,066 - Pf6N2E2_5219 0.19 -0.5 6,017,066 - Pf6N2E2_5219 0.19 -0.5 6,017,066 - Pf6N2E2_5219 0.19 +0.2 6,017,066 - Pf6N2E2_5219 0.19 -2.2 6,017,066 - Pf6N2E2_5219 0.19 +1.1 6,017,066 - Pf6N2E2_5219 0.19 +0.5 6,017,066 - Pf6N2E2_5219 0.19 -1.0 6,017,066 - Pf6N2E2_5219 0.19 -1.3 6,017,066 - Pf6N2E2_5219 0.19 -0.9
Or see this region's nucleotide sequence