Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5211 and Pf6N2E2_5212 are separated by 144 nucleotides Pf6N2E2_5212 and Pf6N2E2_5213 overlap by 14 nucleotides Pf6N2E2_5213 and Pf6N2E2_5214 are separated by 22 nucleotides Pf6N2E2_5214 and Pf6N2E2_5215 are separated by 166 nucleotides
Pf6N2E2_5211 - Possible monoamine oxidase, at 6,010,273 to 6,011,394
_5211
Pf6N2E2_5212 - GTP-binding and nucleic acid-binding protein YchF, at 6,011,539 to 6,012,087
_5212
Pf6N2E2_5213 - GTP-binding and nucleic acid-binding protein YchF, at 6,012,074 to 6,012,640
_5213
Pf6N2E2_5214 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 6,012,663 to 6,013,247
_5214
Pf6N2E2_5215 - LSU ribosomal protein L25p, at 6,013,414 to 6,014,016
_5215
Position (kb)
6012
6013 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6011.120 kb on + strand, within Pf6N2E2_5211 at 6011.120 kb on + strand, within Pf6N2E2_5211 at 6011.120 kb on + strand, within Pf6N2E2_5211 at 6011.121 kb on - strand, within Pf6N2E2_5211 at 6011.121 kb on - strand, within Pf6N2E2_5211 at 6011.121 kb on - strand, within Pf6N2E2_5211 at 6011.145 kb on + strand, within Pf6N2E2_5211 at 6011.145 kb on + strand, within Pf6N2E2_5211 at 6011.146 kb on - strand, within Pf6N2E2_5211 at 6011.229 kb on + strand, within Pf6N2E2_5211 at 6011.230 kb on - strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.231 kb on + strand, within Pf6N2E2_5211 at 6011.232 kb on - strand, within Pf6N2E2_5211 at 6011.232 kb on - strand, within Pf6N2E2_5211 at 6011.232 kb on - strand, within Pf6N2E2_5211 at 6011.255 kb on + strand, within Pf6N2E2_5211 at 6011.322 kb on + strand at 6011.322 kb on + strand at 6011.386 kb on - strand at 6011.404 kb on - strand at 6011.415 kb on + strand at 6011.515 kb on - strand at 6011.515 kb on - strand at 6011.586 kb on - strand at 6012.023 kb on + strand, within Pf6N2E2_5212 at 6012.658 kb on - strand at 6012.658 kb on - strand at 6012.658 kb on - strand at 6012.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 6,011,120 + Pf6N2E2_5211 0.75 -1.0 6,011,120 + Pf6N2E2_5211 0.75 -0.2 6,011,120 + Pf6N2E2_5211 0.75 +0.0 6,011,121 - Pf6N2E2_5211 0.76 +0.2 6,011,121 - Pf6N2E2_5211 0.76 +0.5 6,011,121 - Pf6N2E2_5211 0.76 +1.1 6,011,145 + Pf6N2E2_5211 0.78 +0.3 6,011,145 + Pf6N2E2_5211 0.78 +0.2 6,011,146 - Pf6N2E2_5211 0.78 +0.2 6,011,229 + Pf6N2E2_5211 0.85 -0.5 6,011,230 - Pf6N2E2_5211 0.85 +0.8 6,011,231 + Pf6N2E2_5211 0.85 -0.1 6,011,231 + Pf6N2E2_5211 0.85 -0.3 6,011,231 + Pf6N2E2_5211 0.85 -0.6 6,011,231 + Pf6N2E2_5211 0.85 +0.9 6,011,231 + Pf6N2E2_5211 0.85 +0.5 6,011,231 + Pf6N2E2_5211 0.85 +0.5 6,011,231 + Pf6N2E2_5211 0.85 -1.7 6,011,231 + Pf6N2E2_5211 0.85 -0.5 6,011,232 - Pf6N2E2_5211 0.85 +2.7 6,011,232 - Pf6N2E2_5211 0.85 +0.0 6,011,232 - Pf6N2E2_5211 0.85 -0.7 6,011,255 + Pf6N2E2_5211 0.88 +0.7 6,011,322 + -0.1 6,011,322 + -0.6 6,011,386 - -1.8 6,011,404 - +0.7 6,011,415 + +0.5 6,011,515 - -0.5 6,011,515 - -1.3 6,011,586 - +1.1 6,012,023 + Pf6N2E2_5212 0.88 +0.1 6,012,658 - +0.8 6,012,658 - -0.5 6,012,658 - -0.4 6,012,658 - +0.6
Or see this region's nucleotide sequence