Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5108

Experiment: RCH2_defined

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5107 and Pf6N2E2_5108 are separated by 267 nucleotidesPf6N2E2_5108 and Pf6N2E2_5109 are separated by 13 nucleotides Pf6N2E2_5107 - Proposed peptidoglycan lipid II flippase MurJ, at 5,889,403 to 5,890,941 _5107 Pf6N2E2_5108 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 5,891,209 to 5,892,009 _5108 Pf6N2E2_5109 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 5,892,023 to 5,894,854 _5109 Position (kb) 5891 5892 5893Strain fitness (log2 ratio) -1 0 1at 5891.037 kb on + strandat 5891.037 kb on + strandat 5891.052 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
remove
5,891,037 + -0.4
5,891,037 + -0.5
5,891,052 + -0.0

Or see this region's nucleotide sequence