Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5004

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5002 and Pf6N2E2_5003 overlap by 1 nucleotidesPf6N2E2_5003 and Pf6N2E2_5004 are separated by 1 nucleotidesPf6N2E2_5004 and Pf6N2E2_5005 are separated by 797 nucleotides Pf6N2E2_5002 - Proposed lipoate regulatory protein YbeD, at 5,768,630 to 5,768,905 _5002 Pf6N2E2_5003 - Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase, at 5,768,905 to 5,769,552 _5003 Pf6N2E2_5004 - Lipoate synthase, at 5,769,554 to 5,770,576 _5004 Pf6N2E2_5005 - hypothetical protein, at 5,771,374 to 5,771,499 _5005 Position (kb) 5769 5770 5771Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5769.553 kb on + strandat 5770.543 kb on + strandat 5770.543 kb on + strandat 5770.543 kb on + strandat 5770.543 kb on + strandat 5770.543 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.597 kb on + strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.598 kb on - strandat 5770.621 kb on + strandat 5770.625 kb on + strandat 5770.625 kb on + strandat 5770.626 kb on - strandat 5770.626 kb on - strandat 5770.626 kb on - strandat 5770.640 kb on - strandat 5770.818 kb on + strandat 5770.818 kb on + strandat 5770.819 kb on - strandat 5770.881 kb on + strandat 5770.882 kb on - strandat 5770.882 kb on - strandat 5770.884 kb on - strandat 5770.884 kb on - strandat 5770.898 kb on - strandat 5770.898 kb on - strandat 5770.950 kb on + strandat 5770.950 kb on + strandat 5770.950 kb on + strandat 5770.951 kb on - strandat 5770.951 kb on - strandat 5771.048 kb on + strandat 5771.048 kb on + strandat 5771.049 kb on - strandat 5771.057 kb on - strandat 5771.089 kb on - strandat 5771.103 kb on - strandat 5771.270 kb on - strandat 5771.363 kb on + strandat 5771.547 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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5,769,553 + -0.8
5,770,543 + -0.0
5,770,543 + -2.4
5,770,543 + -0.4
5,770,543 + +0.3
5,770,543 + -0.2
5,770,597 + +0.7
5,770,597 + +0.7
5,770,597 + +0.2
5,770,597 + -0.2
5,770,597 + +0.2
5,770,597 + -0.3
5,770,597 + -0.0
5,770,597 + +0.2
5,770,597 + +1.6
5,770,597 + +0.6
5,770,597 + -0.1
5,770,597 + +0.9
5,770,597 + -0.0
5,770,597 + +1.0
5,770,597 + +0.0
5,770,597 + +3.7
5,770,597 + -0.9
5,770,597 + +0.3
5,770,597 + -0.3
5,770,597 + +0.1
5,770,597 + +0.6
5,770,597 + +0.8
5,770,597 + +0.2
5,770,598 - +1.4
5,770,598 - -0.3
5,770,598 - -0.0
5,770,598 - -0.4
5,770,598 - -0.7
5,770,598 - +1.2
5,770,598 - +0.3
5,770,598 - -0.0
5,770,598 - +1.7
5,770,598 - -1.6
5,770,598 - -0.7
5,770,621 + +0.5
5,770,625 + -0.5
5,770,625 + -0.9
5,770,626 - +0.2
5,770,626 - +0.6
5,770,626 - -0.4
5,770,640 - -0.9
5,770,818 + -0.7
5,770,818 + -0.4
5,770,819 - -1.4
5,770,881 + -0.1
5,770,882 - -0.3
5,770,882 - -0.0
5,770,884 - -1.2
5,770,884 - +0.1
5,770,898 - -1.1
5,770,898 - -0.9
5,770,950 + -0.1
5,770,950 + -0.6
5,770,950 + +0.7
5,770,951 - +0.3
5,770,951 - +0.2
5,771,048 + -0.2
5,771,048 + +0.5
5,771,049 - +0.8
5,771,057 - +0.2
5,771,089 - -0.1
5,771,103 - +0.0
5,771,270 - -0.2
5,771,363 + +0.7
5,771,547 + +0.5

Or see this region's nucleotide sequence