Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5002 and Pf6N2E2_5003 overlap by 1 nucleotides Pf6N2E2_5003 and Pf6N2E2_5004 are separated by 1 nucleotides Pf6N2E2_5004 and Pf6N2E2_5005 are separated by 797 nucleotides
Pf6N2E2_5002 - Proposed lipoate regulatory protein YbeD, at 5,768,630 to 5,768,905
_5002
Pf6N2E2_5003 - Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase, at 5,768,905 to 5,769,552
_5003
Pf6N2E2_5004 - Lipoate synthase, at 5,769,554 to 5,770,576
_5004
Pf6N2E2_5005 - hypothetical protein, at 5,771,374 to 5,771,499
_5005
Position (kb)
5769
5770
5771 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5769.553 kb on + strand at 5770.543 kb on + strand at 5770.543 kb on + strand at 5770.543 kb on + strand at 5770.543 kb on + strand at 5770.543 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.597 kb on + strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.598 kb on - strand at 5770.621 kb on + strand at 5770.625 kb on + strand at 5770.625 kb on + strand at 5770.626 kb on - strand at 5770.626 kb on - strand at 5770.626 kb on - strand at 5770.640 kb on - strand at 5770.818 kb on + strand at 5770.818 kb on + strand at 5770.819 kb on - strand at 5770.881 kb on + strand at 5770.882 kb on - strand at 5770.882 kb on - strand at 5770.884 kb on - strand at 5770.884 kb on - strand at 5770.898 kb on - strand at 5770.898 kb on - strand at 5770.950 kb on + strand at 5770.950 kb on + strand at 5770.950 kb on + strand at 5770.951 kb on - strand at 5770.951 kb on - strand at 5771.048 kb on + strand at 5771.048 kb on + strand at 5771.049 kb on - strand at 5771.057 kb on - strand at 5771.089 kb on - strand at 5771.103 kb on - strand at 5771.270 kb on - strand at 5771.363 kb on + strand at 5771.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,769,553 + -0.8 5,770,543 + -0.0 5,770,543 + -2.4 5,770,543 + -0.4 5,770,543 + +0.3 5,770,543 + -0.2 5,770,597 + +0.7 5,770,597 + +0.7 5,770,597 + +0.2 5,770,597 + -0.2 5,770,597 + +0.2 5,770,597 + -0.3 5,770,597 + -0.0 5,770,597 + +0.2 5,770,597 + +1.6 5,770,597 + +0.6 5,770,597 + -0.1 5,770,597 + +0.9 5,770,597 + -0.0 5,770,597 + +1.0 5,770,597 + +0.0 5,770,597 + +3.7 5,770,597 + -0.9 5,770,597 + +0.3 5,770,597 + -0.3 5,770,597 + +0.1 5,770,597 + +0.6 5,770,597 + +0.8 5,770,597 + +0.2 5,770,598 - +1.4 5,770,598 - -0.3 5,770,598 - -0.0 5,770,598 - -0.4 5,770,598 - -0.7 5,770,598 - +1.2 5,770,598 - +0.3 5,770,598 - -0.0 5,770,598 - +1.7 5,770,598 - -1.6 5,770,598 - -0.7 5,770,621 + +0.5 5,770,625 + -0.5 5,770,625 + -0.9 5,770,626 - +0.2 5,770,626 - +0.6 5,770,626 - -0.4 5,770,640 - -0.9 5,770,818 + -0.7 5,770,818 + -0.4 5,770,819 - -1.4 5,770,881 + -0.1 5,770,882 - -0.3 5,770,882 - -0.0 5,770,884 - -1.2 5,770,884 - +0.1 5,770,898 - -1.1 5,770,898 - -0.9 5,770,950 + -0.1 5,770,950 + -0.6 5,770,950 + +0.7 5,770,951 - +0.3 5,770,951 - +0.2 5,771,048 + -0.2 5,771,048 + +0.5 5,771,049 - +0.8 5,771,057 - +0.2 5,771,089 - -0.1 5,771,103 - +0.0 5,771,270 - -0.2 5,771,363 + +0.7 5,771,547 + +0.5
Or see this region's nucleotide sequence