Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4885

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4884 and Pf6N2E2_4885 are separated by 42 nucleotidesPf6N2E2_4885 and Pf6N2E2_4886 are separated by 224 nucleotides Pf6N2E2_4884 - DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), at 5,632,685 to 5,633,686 _4884 Pf6N2E2_4885 - LSU ribosomal protein L17p, at 5,633,729 to 5,634,115 _4885 Pf6N2E2_4886 - Catalase (EC 1.11.1.6), at 5,634,340 to 5,635,788 _4886 Position (kb) 5633 5634 5635Strain fitness (log2 ratio) -2 -1 0 1at 5634.250 kb on + strandat 5634.275 kb on + strandat 5634.284 kb on + strandat 5634.284 kb on + strandat 5634.326 kb on + strandat 5634.327 kb on - strandat 5634.327 kb on - strandat 5634.361 kb on - strandat 5634.361 kb on - strandat 5634.484 kb on - strandat 5634.524 kb on - strand, within Pf6N2E2_4886at 5634.529 kb on - strand, within Pf6N2E2_4886at 5634.560 kb on - strand, within Pf6N2E2_4886at 5634.892 kb on - strand, within Pf6N2E2_4886at 5634.937 kb on + strand, within Pf6N2E2_4886at 5634.937 kb on + strand, within Pf6N2E2_4886at 5634.937 kb on + strand, within Pf6N2E2_4886at 5634.938 kb on - strand, within Pf6N2E2_4886at 5634.938 kb on - strand, within Pf6N2E2_4886at 5634.938 kb on - strand, within Pf6N2E2_4886at 5634.985 kb on + strand, within Pf6N2E2_4886at 5634.985 kb on + strand, within Pf6N2E2_4886at 5634.985 kb on + strand, within Pf6N2E2_4886at 5634.986 kb on - strand, within Pf6N2E2_4886at 5634.986 kb on - strand, within Pf6N2E2_4886at 5634.986 kb on - strand, within Pf6N2E2_4886at 5635.058 kb on - strand, within Pf6N2E2_4886

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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5,634,250 + -1.6
5,634,275 + +0.2
5,634,284 + +0.3
5,634,284 + -0.5
5,634,326 + +0.7
5,634,327 - -0.2
5,634,327 - +0.2
5,634,361 - -0.3
5,634,361 - +1.3
5,634,484 - -1.2
5,634,524 - Pf6N2E2_4886 0.13 +1.5
5,634,529 - Pf6N2E2_4886 0.13 -0.7
5,634,560 - Pf6N2E2_4886 0.15 -0.4
5,634,892 - Pf6N2E2_4886 0.38 +0.4
5,634,937 + Pf6N2E2_4886 0.41 -1.3
5,634,937 + Pf6N2E2_4886 0.41 -0.1
5,634,937 + Pf6N2E2_4886 0.41 +1.6
5,634,938 - Pf6N2E2_4886 0.41 -1.2
5,634,938 - Pf6N2E2_4886 0.41 +0.6
5,634,938 - Pf6N2E2_4886 0.41 +0.8
5,634,985 + Pf6N2E2_4886 0.45 +0.8
5,634,985 + Pf6N2E2_4886 0.45 -0.0
5,634,985 + Pf6N2E2_4886 0.45 -1.1
5,634,986 - Pf6N2E2_4886 0.45 -1.9
5,634,986 - Pf6N2E2_4886 0.45 +0.4
5,634,986 - Pf6N2E2_4886 0.45 -0.6
5,635,058 - Pf6N2E2_4886 0.50 +0.4

Or see this region's nucleotide sequence