Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4884 and Pf6N2E2_4885 are separated by 42 nucleotides Pf6N2E2_4885 and Pf6N2E2_4886 are separated by 224 nucleotides
Pf6N2E2_4884 - DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), at 5,632,685 to 5,633,686
_4884
Pf6N2E2_4885 - LSU ribosomal protein L17p, at 5,633,729 to 5,634,115
_4885
Pf6N2E2_4886 - Catalase (EC 1.11.1.6), at 5,634,340 to 5,635,788
_4886
Position (kb)
5633
5634
5635 Strain fitness (log2 ratio)
-2
-1
0
1 at 5634.250 kb on + strand at 5634.275 kb on + strand at 5634.284 kb on + strand at 5634.284 kb on + strand at 5634.326 kb on + strand at 5634.327 kb on - strand at 5634.327 kb on - strand at 5634.361 kb on - strand at 5634.361 kb on - strand at 5634.484 kb on - strand at 5634.524 kb on - strand, within Pf6N2E2_4886 at 5634.529 kb on - strand, within Pf6N2E2_4886 at 5634.560 kb on - strand, within Pf6N2E2_4886 at 5634.892 kb on - strand, within Pf6N2E2_4886 at 5634.937 kb on + strand, within Pf6N2E2_4886 at 5634.937 kb on + strand, within Pf6N2E2_4886 at 5634.937 kb on + strand, within Pf6N2E2_4886 at 5634.938 kb on - strand, within Pf6N2E2_4886 at 5634.938 kb on - strand, within Pf6N2E2_4886 at 5634.938 kb on - strand, within Pf6N2E2_4886 at 5634.985 kb on + strand, within Pf6N2E2_4886 at 5634.985 kb on + strand, within Pf6N2E2_4886 at 5634.985 kb on + strand, within Pf6N2E2_4886 at 5634.986 kb on - strand, within Pf6N2E2_4886 at 5634.986 kb on - strand, within Pf6N2E2_4886 at 5634.986 kb on - strand, within Pf6N2E2_4886 at 5635.058 kb on - strand, within Pf6N2E2_4886
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,634,250 + -1.6 5,634,275 + +0.2 5,634,284 + +0.3 5,634,284 + -0.5 5,634,326 + +0.7 5,634,327 - -0.2 5,634,327 - +0.2 5,634,361 - -0.3 5,634,361 - +1.3 5,634,484 - -1.2 5,634,524 - Pf6N2E2_4886 0.13 +1.5 5,634,529 - Pf6N2E2_4886 0.13 -0.7 5,634,560 - Pf6N2E2_4886 0.15 -0.4 5,634,892 - Pf6N2E2_4886 0.38 +0.4 5,634,937 + Pf6N2E2_4886 0.41 -1.3 5,634,937 + Pf6N2E2_4886 0.41 -0.1 5,634,937 + Pf6N2E2_4886 0.41 +1.6 5,634,938 - Pf6N2E2_4886 0.41 -1.2 5,634,938 - Pf6N2E2_4886 0.41 +0.6 5,634,938 - Pf6N2E2_4886 0.41 +0.8 5,634,985 + Pf6N2E2_4886 0.45 +0.8 5,634,985 + Pf6N2E2_4886 0.45 -0.0 5,634,985 + Pf6N2E2_4886 0.45 -1.1 5,634,986 - Pf6N2E2_4886 0.45 -1.9 5,634,986 - Pf6N2E2_4886 0.45 +0.4 5,634,986 - Pf6N2E2_4886 0.45 -0.6 5,635,058 - Pf6N2E2_4886 0.50 +0.4
Or see this region's nucleotide sequence