Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4792

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4791 and Pf6N2E2_4792 are separated by 67 nucleotidesPf6N2E2_4792 and Pf6N2E2_4793 are separated by 479 nucleotidesPf6N2E2_4793 and Pf6N2E2_4794 are separated by 199 nucleotides Pf6N2E2_4791 - RNA polymerase sigma factor RpoD, at 5,539,048 to 5,540,895 _4791 Pf6N2E2_4792 - DNA primase (EC 2.7.7.-), at 5,540,963 to 5,542,921 _4792 Pf6N2E2_4793 - SSU ribosomal protein S21p, at 5,543,401 to 5,543,616 _4793 Pf6N2E2_4794 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 5,543,816 to 5,544,841 _4794 Position (kb) 5540 5541 5542 5543Strain fitness (log2 ratio) -2 -1 0 1at 5542.949 kb on - strandat 5543.047 kb on - strandat 5543.047 kb on - strandat 5543.047 kb on - strandat 5543.047 kb on - strandat 5543.047 kb on - strandat 5543.047 kb on - strandat 5543.047 kb on - strandat 5543.071 kb on - strandat 5543.074 kb on - strandat 5543.074 kb on - strandat 5543.074 kb on - strandat 5543.074 kb on - strandat 5543.074 kb on - strandat 5543.078 kb on - strandat 5543.078 kb on - strandat 5543.078 kb on - strandat 5543.078 kb on - strandat 5543.078 kb on - strandat 5543.078 kb on - strandat 5543.078 kb on - strandat 5543.084 kb on - strandat 5543.292 kb on - strandat 5543.292 kb on - strandat 5543.292 kb on - strandat 5543.292 kb on - strandat 5543.292 kb on - strandat 5543.332 kb on - strandat 5543.772 kb on + strandat 5543.772 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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5,542,949 - +0.3
5,543,047 - -0.3
5,543,047 - +0.2
5,543,047 - -0.2
5,543,047 - -0.3
5,543,047 - +1.7
5,543,047 - -0.2
5,543,047 - -0.1
5,543,071 - -1.2
5,543,074 - +0.2
5,543,074 - +1.0
5,543,074 - +1.6
5,543,074 - +0.3
5,543,074 - -0.3
5,543,078 - -0.2
5,543,078 - +0.8
5,543,078 - +1.0
5,543,078 - +0.9
5,543,078 - +0.3
5,543,078 - -0.1
5,543,078 - +0.5
5,543,084 - +0.5
5,543,292 - -0.8
5,543,292 - +0.4
5,543,292 - -0.5
5,543,292 - +0.0
5,543,292 - -2.2
5,543,332 - -0.4
5,543,772 + -1.2
5,543,772 + -1.2

Or see this region's nucleotide sequence