Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4791 and Pf6N2E2_4792 are separated by 67 nucleotides Pf6N2E2_4792 and Pf6N2E2_4793 are separated by 479 nucleotides Pf6N2E2_4793 and Pf6N2E2_4794 are separated by 199 nucleotides
Pf6N2E2_4791 - RNA polymerase sigma factor RpoD, at 5,539,048 to 5,540,895
_4791
Pf6N2E2_4792 - DNA primase (EC 2.7.7.-), at 5,540,963 to 5,542,921
_4792
Pf6N2E2_4793 - SSU ribosomal protein S21p, at 5,543,401 to 5,543,616
_4793
Pf6N2E2_4794 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 5,543,816 to 5,544,841
_4794
Position (kb)
5540
5541
5542
5543 Strain fitness (log2 ratio)
-2
-1
0
1 at 5542.949 kb on - strand at 5543.047 kb on - strand at 5543.047 kb on - strand at 5543.047 kb on - strand at 5543.047 kb on - strand at 5543.047 kb on - strand at 5543.047 kb on - strand at 5543.047 kb on - strand at 5543.071 kb on - strand at 5543.074 kb on - strand at 5543.074 kb on - strand at 5543.074 kb on - strand at 5543.074 kb on - strand at 5543.074 kb on - strand at 5543.078 kb on - strand at 5543.078 kb on - strand at 5543.078 kb on - strand at 5543.078 kb on - strand at 5543.078 kb on - strand at 5543.078 kb on - strand at 5543.078 kb on - strand at 5543.084 kb on - strand at 5543.292 kb on - strand at 5543.292 kb on - strand at 5543.292 kb on - strand at 5543.292 kb on - strand at 5543.292 kb on - strand at 5543.332 kb on - strand at 5543.772 kb on + strand at 5543.772 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,542,949 - +0.3 5,543,047 - -0.3 5,543,047 - +0.2 5,543,047 - -0.2 5,543,047 - -0.3 5,543,047 - +1.7 5,543,047 - -0.2 5,543,047 - -0.1 5,543,071 - -1.2 5,543,074 - +0.2 5,543,074 - +1.0 5,543,074 - +1.6 5,543,074 - +0.3 5,543,074 - -0.3 5,543,078 - -0.2 5,543,078 - +0.8 5,543,078 - +1.0 5,543,078 - +0.9 5,543,078 - +0.3 5,543,078 - -0.1 5,543,078 - +0.5 5,543,084 - +0.5 5,543,292 - -0.8 5,543,292 - +0.4 5,543,292 - -0.5 5,543,292 - +0.0 5,543,292 - -2.2 5,543,332 - -0.4 5,543,772 + -1.2 5,543,772 + -1.2
Or see this region's nucleotide sequence