Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4586

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4585 and Pf6N2E2_4586 are separated by 112 nucleotidesPf6N2E2_4586 and Pf6N2E2_4587 are separated by 185 nucleotidesPf6N2E2_4587 and Pf6N2E2_4588 are separated by 73 nucleotides Pf6N2E2_4585 - Cell division protein FtsX, at 5,315,394 to 5,316,416 _4585 Pf6N2E2_4586 - RNA polymerase sigma factor RpoH, at 5,316,529 to 5,317,383 _4586 Pf6N2E2_4587 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 5,317,569 to 5,318,291 _4587 Pf6N2E2_4588 - COG2363, at 5,318,365 to 5,318,745 _4588 Position (kb) 5316 5317 5318Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5315.591 kb on + strand, within Pf6N2E2_4585at 5315.591 kb on + strand, within Pf6N2E2_4585at 5315.703 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.787 kb on + strand, within Pf6N2E2_4585at 5315.788 kb on - strand, within Pf6N2E2_4585at 5315.788 kb on - strand, within Pf6N2E2_4585at 5315.929 kb on + strand, within Pf6N2E2_4585at 5315.929 kb on + strand, within Pf6N2E2_4585at 5315.930 kb on - strand, within Pf6N2E2_4585at 5315.959 kb on + strand, within Pf6N2E2_4585at 5315.959 kb on + strand, within Pf6N2E2_4585at 5316.076 kb on + strand, within Pf6N2E2_4585at 5316.076 kb on + strand, within Pf6N2E2_4585at 5316.083 kb on + strand, within Pf6N2E2_4585at 5316.083 kb on + strand, within Pf6N2E2_4585at 5316.083 kb on + strand, within Pf6N2E2_4585at 5316.084 kb on - strand, within Pf6N2E2_4585at 5316.121 kb on + strand, within Pf6N2E2_4585at 5316.122 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.132 kb on - strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.156 kb on + strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.157 kb on - strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.160 kb on + strand, within Pf6N2E2_4585at 5316.161 kb on - strand, within Pf6N2E2_4585at 5316.161 kb on - strand, within Pf6N2E2_4585at 5316.161 kb on - strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.177 kb on + strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.178 kb on - strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.179 kb on + strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.180 kb on - strand, within Pf6N2E2_4585at 5316.192 kb on + strand, within Pf6N2E2_4585at 5316.192 kb on + strand, within Pf6N2E2_4585at 5316.192 kb on + strand, within Pf6N2E2_4585at 5316.193 kb on - strand, within Pf6N2E2_4585at 5316.215 kb on - strand, within Pf6N2E2_4585at 5316.215 kb on - strand, within Pf6N2E2_4585at 5316.215 kb on - strand, within Pf6N2E2_4585at 5316.283 kb on - strand, within Pf6N2E2_4585at 5316.360 kb on + strandat 5316.463 kb on + strandat 5316.505 kb on + strandat 5317.400 kb on + strandat 5317.557 kb on + strandat 5317.558 kb on - strandat 5317.615 kb on + strandat 5317.616 kb on - strandat 5317.675 kb on + strand, within Pf6N2E2_4587at 5317.675 kb on + strand, within Pf6N2E2_4587at 5317.676 kb on - strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5318.280 kb on + strandat 5318.281 kb on - strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.292 kb on - strandat 5318.327 kb on + strandat 5318.328 kb on - strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.373 kb on + strandat 5318.373 kb on + strandat 5318.374 kb on - strandat 5318.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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5,315,591 + Pf6N2E2_4585 0.19 -0.1
5,315,591 + Pf6N2E2_4585 0.19 -0.5
5,315,703 + Pf6N2E2_4585 0.30 -1.0
5,315,787 + Pf6N2E2_4585 0.38 -0.8
5,315,787 + Pf6N2E2_4585 0.38 -1.4
5,315,787 + Pf6N2E2_4585 0.38 -0.1
5,315,787 + Pf6N2E2_4585 0.38 -1.8
5,315,788 - Pf6N2E2_4585 0.39 +1.2
5,315,788 - Pf6N2E2_4585 0.39 -0.4
5,315,929 + Pf6N2E2_4585 0.52 +0.8
5,315,929 + Pf6N2E2_4585 0.52 -0.6
5,315,930 - Pf6N2E2_4585 0.52 -1.7
5,315,959 + Pf6N2E2_4585 0.55 +0.4
5,315,959 + Pf6N2E2_4585 0.55 +1.2
5,316,076 + Pf6N2E2_4585 0.67 +1.2
5,316,076 + Pf6N2E2_4585 0.67 -0.6
5,316,083 + Pf6N2E2_4585 0.67 -1.6
5,316,083 + Pf6N2E2_4585 0.67 -0.3
5,316,083 + Pf6N2E2_4585 0.67 +0.2
5,316,084 - Pf6N2E2_4585 0.67 -0.6
5,316,121 + Pf6N2E2_4585 0.71 -2.0
5,316,122 - Pf6N2E2_4585 0.71 +2.2
5,316,132 - Pf6N2E2_4585 0.72 -1.4
5,316,132 - Pf6N2E2_4585 0.72 -1.3
5,316,132 - Pf6N2E2_4585 0.72 -1.3
5,316,132 - Pf6N2E2_4585 0.72 -0.5
5,316,156 + Pf6N2E2_4585 0.74 -1.5
5,316,156 + Pf6N2E2_4585 0.74 -0.2
5,316,156 + Pf6N2E2_4585 0.74 -0.8
5,316,156 + Pf6N2E2_4585 0.74 -0.0
5,316,156 + Pf6N2E2_4585 0.74 -2.7
5,316,156 + Pf6N2E2_4585 0.74 -0.0
5,316,156 + Pf6N2E2_4585 0.74 -0.5
5,316,156 + Pf6N2E2_4585 0.74 -0.1
5,316,156 + Pf6N2E2_4585 0.74 -0.2
5,316,157 - Pf6N2E2_4585 0.75 -0.1
5,316,157 - Pf6N2E2_4585 0.75 -0.7
5,316,157 - Pf6N2E2_4585 0.75 +0.2
5,316,157 - Pf6N2E2_4585 0.75 -1.4
5,316,157 - Pf6N2E2_4585 0.75 -0.2
5,316,160 + Pf6N2E2_4585 0.75 +1.0
5,316,160 + Pf6N2E2_4585 0.75 -1.0
5,316,160 + Pf6N2E2_4585 0.75 -0.3
5,316,160 + Pf6N2E2_4585 0.75 -1.4
5,316,161 - Pf6N2E2_4585 0.75 -1.4
5,316,161 - Pf6N2E2_4585 0.75 -1.0
5,316,161 - Pf6N2E2_4585 0.75 +0.6
5,316,177 + Pf6N2E2_4585 0.77 -0.7
5,316,177 + Pf6N2E2_4585 0.77 -3.5
5,316,177 + Pf6N2E2_4585 0.77 -0.2
5,316,177 + Pf6N2E2_4585 0.77 -0.8
5,316,177 + Pf6N2E2_4585 0.77 -2.5
5,316,177 + Pf6N2E2_4585 0.77 -2.2
5,316,178 - Pf6N2E2_4585 0.77 -0.3
5,316,178 - Pf6N2E2_4585 0.77 -1.0
5,316,178 - Pf6N2E2_4585 0.77 +1.0
5,316,178 - Pf6N2E2_4585 0.77 -1.7
5,316,178 - Pf6N2E2_4585 0.77 +1.5
5,316,179 + Pf6N2E2_4585 0.77 -0.4
5,316,179 + Pf6N2E2_4585 0.77 +0.7
5,316,179 + Pf6N2E2_4585 0.77 -0.4
5,316,179 + Pf6N2E2_4585 0.77 -1.1
5,316,180 - Pf6N2E2_4585 0.77 +0.5
5,316,180 - Pf6N2E2_4585 0.77 +0.2
5,316,180 - Pf6N2E2_4585 0.77 -2.7
5,316,180 - Pf6N2E2_4585 0.77 +1.2
5,316,192 + Pf6N2E2_4585 0.78 -0.8
5,316,192 + Pf6N2E2_4585 0.78 -1.0
5,316,192 + Pf6N2E2_4585 0.78 -0.6
5,316,193 - Pf6N2E2_4585 0.78 -0.4
5,316,215 - Pf6N2E2_4585 0.80 -1.2
5,316,215 - Pf6N2E2_4585 0.80 -1.1
5,316,215 - Pf6N2E2_4585 0.80 +0.2
5,316,283 - Pf6N2E2_4585 0.87 -0.7
5,316,360 + -0.0
5,316,463 + -0.7
5,316,505 + +0.4
5,317,400 + -0.4
5,317,557 + +1.2
5,317,558 - -0.3
5,317,615 + +0.5
5,317,616 - +0.3
5,317,675 + Pf6N2E2_4587 0.15 +0.5
5,317,675 + Pf6N2E2_4587 0.15 -0.1
5,317,676 - Pf6N2E2_4587 0.15 +0.4
5,317,837 + Pf6N2E2_4587 0.37 +0.2
5,317,837 + Pf6N2E2_4587 0.37 +0.7
5,317,837 + Pf6N2E2_4587 0.37 +0.7
5,317,837 + Pf6N2E2_4587 0.37 -0.2
5,317,838 - Pf6N2E2_4587 0.37 +0.5
5,317,838 - Pf6N2E2_4587 0.37 +0.5
5,317,838 - Pf6N2E2_4587 0.37 -0.6
5,317,838 - Pf6N2E2_4587 0.37 +0.8
5,318,280 + +0.0
5,318,281 - -0.6
5,318,291 + -0.8
5,318,291 + -0.4
5,318,291 + -0.6
5,318,291 + -1.2
5,318,291 + +0.8
5,318,292 - +0.2
5,318,327 + +0.5
5,318,328 - -0.2
5,318,329 + -1.0
5,318,329 + -0.7
5,318,329 + +0.7
5,318,329 + +0.1
5,318,329 + +0.8
5,318,329 + +0.9
5,318,329 + -1.3
5,318,329 + +0.1
5,318,329 + -0.4
5,318,329 + -1.0
5,318,329 + -0.3
5,318,329 + -0.8
5,318,329 + -0.0
5,318,330 - +0.8
5,318,330 - +0.4
5,318,330 - +0.8
5,318,330 - +2.2
5,318,330 - -0.2
5,318,330 - +0.3
5,318,330 - +0.5
5,318,330 - -1.5
5,318,330 - +1.2
5,318,330 - -1.6
5,318,373 + -0.6
5,318,373 + +0.7
5,318,374 - +0.1
5,318,374 - +0.5

Or see this region's nucleotide sequence