Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4496 and Pf6N2E2_4497 are separated by 132 nucleotides Pf6N2E2_4497 and Pf6N2E2_4498 are separated by 473 nucleotides
Pf6N2E2_4496 - Acetylornithine deacetylase (EC 3.5.1.16), at 5,227,832 to 5,228,989
_4496
Pf6N2E2_4497 - N-acetylglutamate synthase (EC 2.3.1.1), at 5,229,122 to 5,230,420
_4497
Pf6N2E2_4498 - Outer membrane porin, OprD family, at 5,230,894 to 5,232,216
_4498
Position (kb) 5229
5230
5231 Strain fitness (log2 ratio) -1
0
1
2 at 5228.686 kb on + strand, within Pf6N2E2_4496 at 5228.686 kb on + strand, within Pf6N2E2_4496 at 5228.702 kb on + strand, within Pf6N2E2_4496 at 5228.702 kb on + strand, within Pf6N2E2_4496 at 5228.825 kb on + strand, within Pf6N2E2_4496 at 5228.825 kb on + strand, within Pf6N2E2_4496 at 5228.825 kb on + strand, within Pf6N2E2_4496 at 5228.825 kb on + strand, within Pf6N2E2_4496 at 5228.825 kb on + strand, within Pf6N2E2_4496 at 5228.826 kb on - strand, within Pf6N2E2_4496 at 5228.826 kb on - strand, within Pf6N2E2_4496 at 5228.900 kb on + strand at 5228.901 kb on - strand at 5228.901 kb on - strand at 5228.960 kb on + strand at 5229.100 kb on + strand at 5229.100 kb on + strand at 5229.100 kb on + strand at 5229.104 kb on + strand at 5229.107 kb on + strand at 5229.107 kb on + strand at 5229.107 kb on + strand at 5230.418 kb on + strand at 5230.419 kb on - strand at 5230.419 kb on - strand at 5230.436 kb on + strand at 5230.500 kb on - strand at 5230.537 kb on + strand at 5230.548 kb on + strand at 5230.548 kb on + strand at 5230.549 kb on - strand at 5230.566 kb on - strand at 5230.613 kb on + strand at 5230.613 kb on + strand at 5230.669 kb on + strand at 5230.669 kb on + strand at 5230.671 kb on + strand at 5230.671 kb on + strand at 5230.748 kb on + strand at 5230.749 kb on - strand at 5230.749 kb on - strand at 5230.749 kb on - strand at 5230.757 kb on + strand at 5230.758 kb on - strand at 5230.758 kb on - strand at 5230.776 kb on + strand at 5230.776 kb on + strand at 5230.776 kb on + strand at 5230.776 kb on + strand at 5230.777 kb on - strand at 5230.861 kb on + strand at 5230.861 kb on + strand at 5230.861 kb on + strand at 5230.862 kb on - strand at 5230.873 kb on - strand at 5230.965 kb on + strand at 5230.983 kb on + strand at 5230.983 kb on + strand at 5230.984 kb on - strand at 5231.005 kb on + strand at 5231.005 kb on + strand at 5231.005 kb on + strand at 5231.005 kb on + strand at 5231.006 kb on - strand at 5231.006 kb on - strand at 5231.037 kb on + strand, within Pf6N2E2_4498 at 5231.037 kb on + strand, within Pf6N2E2_4498 at 5231.037 kb on + strand, within Pf6N2E2_4498 at 5231.037 kb on + strand, within Pf6N2E2_4498 at 5231.038 kb on - strand, within Pf6N2E2_4498 at 5231.038 kb on - strand, within Pf6N2E2_4498 at 5231.195 kb on - strand, within Pf6N2E2_4498
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,228,686 + Pf6N2E2_4496 0.74 +0.2 5,228,686 + Pf6N2E2_4496 0.74 +1.2 5,228,702 + Pf6N2E2_4496 0.75 +0.4 5,228,702 + Pf6N2E2_4496 0.75 +0.2 5,228,825 + Pf6N2E2_4496 0.86 +0.8 5,228,825 + Pf6N2E2_4496 0.86 +0.2 5,228,825 + Pf6N2E2_4496 0.86 +0.8 5,228,825 + Pf6N2E2_4496 0.86 -0.5 5,228,825 + Pf6N2E2_4496 0.86 -0.5 5,228,826 - Pf6N2E2_4496 0.86 -0.3 5,228,826 - Pf6N2E2_4496 0.86 -0.5 5,228,900 + +0.2 5,228,901 - -0.4 5,228,901 - -0.6 5,228,960 + -0.3 5,229,100 + +0.5 5,229,100 + -0.5 5,229,100 + +0.6 5,229,104 + +0.9 5,229,107 + +0.3 5,229,107 + +0.2 5,229,107 + -0.7 5,230,418 + -0.2 5,230,419 - +0.9 5,230,419 - +1.0 5,230,436 + +0.7 5,230,500 - -0.6 5,230,537 + +0.2 5,230,548 + +0.9 5,230,548 + +0.2 5,230,549 - +0.1 5,230,566 - +0.8 5,230,613 + -0.0 5,230,613 + +0.1 5,230,669 + +0.0 5,230,669 + +0.3 5,230,671 + +0.4 5,230,671 + +0.2 5,230,748 + -0.5 5,230,749 - -0.8 5,230,749 - -0.6 5,230,749 - -0.4 5,230,757 + +0.3 5,230,758 - -0.2 5,230,758 - -0.7 5,230,776 + +0.1 5,230,776 + +0.8 5,230,776 + +0.4 5,230,776 + +0.2 5,230,777 - -0.4 5,230,861 + +0.3 5,230,861 + +0.4 5,230,861 + +0.4 5,230,862 - +0.4 5,230,873 - +1.0 5,230,965 + +0.0 5,230,983 + +0.2 5,230,983 + +0.2 5,230,984 - +0.2 5,231,005 + +0.6 5,231,005 + +0.8 5,231,005 + +1.9 5,231,005 + -0.5 5,231,006 - -0.1 5,231,006 - +1.2 5,231,037 + Pf6N2E2_4498 0.11 -0.5 5,231,037 + Pf6N2E2_4498 0.11 +0.5 5,231,037 + Pf6N2E2_4498 0.11 +0.4 5,231,037 + Pf6N2E2_4498 0.11 -0.1 5,231,038 - Pf6N2E2_4498 0.11 -0.1 5,231,038 - Pf6N2E2_4498 0.11 +0.9 5,231,195 - Pf6N2E2_4498 0.23 -0.8
Or see this region's nucleotide sequence