Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4374 and Pf6N2E2_4375 are separated by 257 nucleotides Pf6N2E2_4375 and Pf6N2E2_4376 are separated by 4 nucleotides Pf6N2E2_4376 and Pf6N2E2_4377 are separated by 144 nucleotides Pf6N2E2_4377 and Pf6N2E2_4378 are separated by 77 nucleotides
Pf6N2E2_4374 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 5,102,742 to 5,104,139
_4374
Pf6N2E2_4375 - Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), at 5,104,397 to 5,104,852
_4375
Pf6N2E2_4376 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 5,104,857 to 5,106,065
_4376
Pf6N2E2_4377 - DNA repair protein RadC, at 5,106,210 to 5,106,884
_4377
Pf6N2E2_4378 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 5,106,962 to 5,108,551
_4378
Position (kb) 5104
5105
5106
5107 Strain fitness (log2 ratio) -1
0
1 at 5103.859 kb on + strand, within Pf6N2E2_4374 at 5103.860 kb on - strand, within Pf6N2E2_4374 at 5103.862 kb on + strand, within Pf6N2E2_4374 at 5103.862 kb on + strand, within Pf6N2E2_4374 at 5103.862 kb on + strand, within Pf6N2E2_4374 at 5103.862 kb on + strand, within Pf6N2E2_4374 at 5103.863 kb on - strand, within Pf6N2E2_4374 at 5103.863 kb on - strand, within Pf6N2E2_4374 at 5103.927 kb on + strand, within Pf6N2E2_4374 at 5103.928 kb on - strand, within Pf6N2E2_4374 at 5103.928 kb on - strand, within Pf6N2E2_4374 at 5104.084 kb on + strand at 5104.153 kb on + strand at 5104.211 kb on + strand at 5104.211 kb on + strand at 5104.285 kb on + strand at 5104.285 kb on + strand at 5104.286 kb on - strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.288 kb on + strand at 5104.289 kb on - strand at 5104.289 kb on - strand at 5104.289 kb on - strand at 5104.289 kb on - strand at 5104.289 kb on - strand at 5104.313 kb on - strand at 5104.313 kb on - strand at 5104.859 kb on - strand at 5104.859 kb on - strand at 5104.859 kb on - strand at 5104.859 kb on - strand at 5104.859 kb on - strand at 5106.066 kb on - strand at 5106.156 kb on - strand at 5106.156 kb on - strand at 5106.215 kb on + strand at 5106.215 kb on + strand at 5106.215 kb on + strand at 5106.216 kb on - strand at 5106.216 kb on - strand at 5106.216 kb on - strand at 5106.281 kb on - strand, within Pf6N2E2_4377 at 5106.358 kb on + strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.359 kb on - strand, within Pf6N2E2_4377 at 5106.422 kb on + strand, within Pf6N2E2_4377 at 5106.422 kb on + strand, within Pf6N2E2_4377 at 5106.423 kb on - strand, within Pf6N2E2_4377 at 5106.544 kb on - strand, within Pf6N2E2_4377 at 5106.963 kb on + strand at 5106.987 kb on + strand at 5106.988 kb on - strand at 5106.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,103,859 + Pf6N2E2_4374 0.80 +0.6 5,103,860 - Pf6N2E2_4374 0.80 -0.8 5,103,862 + Pf6N2E2_4374 0.80 +0.0 5,103,862 + Pf6N2E2_4374 0.80 -0.1 5,103,862 + Pf6N2E2_4374 0.80 -0.7 5,103,862 + Pf6N2E2_4374 0.80 +1.1 5,103,863 - Pf6N2E2_4374 0.80 -0.7 5,103,863 - Pf6N2E2_4374 0.80 +0.1 5,103,927 + Pf6N2E2_4374 0.85 -0.1 5,103,928 - Pf6N2E2_4374 0.85 +0.1 5,103,928 - Pf6N2E2_4374 0.85 +0.8 5,104,084 + -0.1 5,104,153 + +0.3 5,104,211 + +0.4 5,104,211 + +0.1 5,104,285 + +0.2 5,104,285 + +0.9 5,104,286 - +0.5 5,104,288 + +0.6 5,104,288 + +0.2 5,104,288 + -0.1 5,104,288 + +0.1 5,104,288 + -0.6 5,104,288 + +0.4 5,104,288 + -0.6 5,104,288 + +0.3 5,104,288 + -1.3 5,104,288 + -0.9 5,104,288 + +0.5 5,104,288 + +0.5 5,104,288 + +0.3 5,104,288 + +0.2 5,104,288 + -0.8 5,104,288 + -1.1 5,104,289 - +0.2 5,104,289 - +1.1 5,104,289 - +0.3 5,104,289 - -0.3 5,104,289 - -0.2 5,104,313 - -0.0 5,104,313 - -0.2 5,104,859 - +0.2 5,104,859 - -0.6 5,104,859 - +0.1 5,104,859 - +0.5 5,104,859 - +0.7 5,106,066 - -0.6 5,106,156 - -0.9 5,106,156 - -0.8 5,106,215 + +0.3 5,106,215 + +0.2 5,106,215 + -0.4 5,106,216 - +0.5 5,106,216 - -0.1 5,106,216 - +1.0 5,106,281 - Pf6N2E2_4377 0.11 -0.3 5,106,358 + Pf6N2E2_4377 0.22 -0.1 5,106,359 - Pf6N2E2_4377 0.22 -1.7 5,106,359 - Pf6N2E2_4377 0.22 -1.3 5,106,359 - Pf6N2E2_4377 0.22 +0.1 5,106,359 - Pf6N2E2_4377 0.22 -0.5 5,106,359 - Pf6N2E2_4377 0.22 -0.2 5,106,359 - Pf6N2E2_4377 0.22 +0.6 5,106,359 - Pf6N2E2_4377 0.22 -0.5 5,106,359 - Pf6N2E2_4377 0.22 +0.6 5,106,359 - Pf6N2E2_4377 0.22 +0.6 5,106,422 + Pf6N2E2_4377 0.31 -0.8 5,106,422 + Pf6N2E2_4377 0.31 +0.6 5,106,423 - Pf6N2E2_4377 0.32 -0.6 5,106,544 - Pf6N2E2_4377 0.49 -0.4 5,106,963 + -0.1 5,106,987 + +0.3 5,106,988 - +0.1 5,106,988 - -0.3
Or see this region's nucleotide sequence