Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4199 and Pf6N2E2_4200 are separated by 927 nucleotides Pf6N2E2_4200 and Pf6N2E2_4201 are separated by 240 nucleotides
Pf6N2E2_4199 - Chromosomal replication initiator protein DnaA, at 4,887,444 to 4,888,964
_4199
Pf6N2E2_4200 - Ribonuclease P protein component (EC 3.1.26.5), at 4,889,892 to 4,890,089
_4200
Pf6N2E2_4201 - Inner membrane protein translocase component YidC, long form, at 4,890,330 to 4,892,012
_4201
Position (kb)
4889
4890
4891 Strain fitness (log2 ratio)
-1
0
1
2 at 4889.040 kb on - strand at 4889.040 kb on - strand at 4889.072 kb on + strand at 4889.073 kb on - strand at 4889.073 kb on - strand at 4889.073 kb on - strand at 4889.272 kb on + strand at 4889.284 kb on + strand at 4889.332 kb on + strand at 4889.358 kb on + strand at 4889.371 kb on + strand at 4889.371 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.379 kb on + strand at 4889.383 kb on + strand at 4889.383 kb on + strand at 4889.383 kb on + strand at 4889.383 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4890.070 kb on + strand at 4890.087 kb on + strand at 4890.115 kb on + strand at 4890.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 4,889,040 - +1.8 4,889,040 - +0.6 4,889,072 + -1.0 4,889,073 - +0.1 4,889,073 - +0.5 4,889,073 - +0.7 4,889,272 + +1.7 4,889,284 + -0.3 4,889,332 + -1.5 4,889,358 + +0.2 4,889,371 + +0.6 4,889,371 + +0.8 4,889,377 + -1.2 4,889,377 + -0.5 4,889,377 + -0.0 4,889,377 + +0.5 4,889,377 + -0.0 4,889,379 + -0.3 4,889,383 + -0.4 4,889,383 + +0.5 4,889,383 + +0.3 4,889,383 + -0.8 4,889,422 + +0.2 4,889,422 + +1.2 4,889,422 + -0.1 4,889,422 + -0.2 4,889,422 + +0.3 4,890,070 + -0.1 4,890,087 + +0.5 4,890,115 + +0.5 4,890,297 + -0.4
Or see this region's nucleotide sequence