Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3670

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3669 and Pf6N2E2_3670 overlap by 1 nucleotidesPf6N2E2_3670 and Pf6N2E2_3671 are separated by 1 nucleotides Pf6N2E2_3669 - UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-), at 4,271,134 to 4,272,258 _3669 Pf6N2E2_3670 - Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-), at 4,272,258 to 4,273,316 _3670 Pf6N2E2_3671 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 4,273,318 to 4,274,352 _3671 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -2 -1 0 1at 4272.280 kb on - strandat 4273.908 kb on - strand, within Pf6N2E2_3671

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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4,272,280 - +0.2
4,273,908 - Pf6N2E2_3671 0.57 -2.0

Or see this region's nucleotide sequence