Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3609

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3608 and Pf6N2E2_3609 are separated by 223 nucleotidesPf6N2E2_3609 and Pf6N2E2_3610 are separated by 54 nucleotides Pf6N2E2_3608 - Methyl-accepting chemotaxis protein, at 4,200,622 to 4,202,484 _3608 Pf6N2E2_3609 - Adenylosuccinate synthetase (EC 6.3.4.4), at 4,202,708 to 4,204,000 _3609 Pf6N2E2_3610 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 4,204,055 to 4,205,242 _3610 Position (kb) 4202 4203 4204 4205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4201.918 kb on + strand, within Pf6N2E2_3608at 4201.919 kb on - strand, within Pf6N2E2_3608at 4201.919 kb on - strand, within Pf6N2E2_3608at 4201.919 kb on - strand, within Pf6N2E2_3608at 4201.919 kb on - strand, within Pf6N2E2_3608at 4201.919 kb on - strand, within Pf6N2E2_3608at 4201.919 kb on - strand, within Pf6N2E2_3608at 4201.919 kb on - strand, within Pf6N2E2_3608at 4201.933 kb on + strand, within Pf6N2E2_3608at 4201.964 kb on + strand, within Pf6N2E2_3608at 4201.964 kb on + strand, within Pf6N2E2_3608at 4201.964 kb on + strand, within Pf6N2E2_3608at 4201.964 kb on + strand, within Pf6N2E2_3608at 4201.967 kb on + strand, within Pf6N2E2_3608at 4201.967 kb on + strand, within Pf6N2E2_3608at 4201.967 kb on + strand, within Pf6N2E2_3608at 4201.967 kb on + strand, within Pf6N2E2_3608at 4201.967 kb on + strand, within Pf6N2E2_3608at 4201.967 kb on + strand, within Pf6N2E2_3608at 4201.968 kb on - strand, within Pf6N2E2_3608at 4201.968 kb on - strand, within Pf6N2E2_3608at 4201.968 kb on - strand, within Pf6N2E2_3608at 4201.968 kb on - strand, within Pf6N2E2_3608at 4201.968 kb on - strand, within Pf6N2E2_3608at 4202.105 kb on + strand, within Pf6N2E2_3608at 4202.105 kb on + strand, within Pf6N2E2_3608at 4202.109 kb on + strand, within Pf6N2E2_3608at 4202.109 kb on + strand, within Pf6N2E2_3608at 4202.124 kb on + strand, within Pf6N2E2_3608at 4202.124 kb on + strand, within Pf6N2E2_3608at 4202.124 kb on + strand, within Pf6N2E2_3608at 4202.125 kb on - strand, within Pf6N2E2_3608at 4202.125 kb on - strand, within Pf6N2E2_3608at 4202.125 kb on - strand, within Pf6N2E2_3608at 4202.125 kb on - strand, within Pf6N2E2_3608at 4202.167 kb on + strand, within Pf6N2E2_3608at 4202.167 kb on + strand, within Pf6N2E2_3608at 4202.167 kb on + strand, within Pf6N2E2_3608at 4202.167 kb on + strand, within Pf6N2E2_3608at 4202.167 kb on + strand, within Pf6N2E2_3608at 4202.168 kb on - strand, within Pf6N2E2_3608at 4202.168 kb on - strand, within Pf6N2E2_3608at 4202.184 kb on + strand, within Pf6N2E2_3608at 4202.184 kb on + strand, within Pf6N2E2_3608at 4202.185 kb on - strand, within Pf6N2E2_3608at 4202.185 kb on - strand, within Pf6N2E2_3608at 4202.185 kb on - strand, within Pf6N2E2_3608at 4202.420 kb on - strandat 4202.420 kb on - strandat 4202.533 kb on + strandat 4202.533 kb on + strandat 4202.533 kb on + strandat 4202.533 kb on + strandat 4202.534 kb on - strandat 4202.570 kb on + strandat 4202.584 kb on - strandat 4202.607 kb on + strandat 4202.607 kb on + strandat 4202.607 kb on + strandat 4202.608 kb on - strandat 4202.608 kb on - strandat 4202.608 kb on - strandat 4202.608 kb on - strandat 4202.608 kb on - strandat 4202.608 kb on - strandat 4202.611 kb on + strandat 4202.611 kb on + strandat 4202.611 kb on + strandat 4202.611 kb on + strandat 4202.612 kb on - strandat 4202.612 kb on - strandat 4202.612 kb on - strandat 4202.612 kb on - strandat 4202.612 kb on - strandat 4202.627 kb on + strandat 4202.627 kb on + strandat 4202.627 kb on + strandat 4202.627 kb on + strandat 4202.627 kb on + strandat 4202.628 kb on - strandat 4202.628 kb on - strandat 4202.657 kb on + strandat 4204.074 kb on - strandat 4204.074 kb on - strandat 4204.220 kb on - strand, within Pf6N2E2_3610at 4204.251 kb on - strand, within Pf6N2E2_3610at 4204.453 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.849 kb on - strand, within Pf6N2E2_3610at 4204.849 kb on - strand, within Pf6N2E2_3610

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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4,201,918 + Pf6N2E2_3608 0.70 +0.4
4,201,919 - Pf6N2E2_3608 0.70 +0.2
4,201,919 - Pf6N2E2_3608 0.70 +0.2
4,201,919 - Pf6N2E2_3608 0.70 -0.1
4,201,919 - Pf6N2E2_3608 0.70 +0.6
4,201,919 - Pf6N2E2_3608 0.70 +0.2
4,201,919 - Pf6N2E2_3608 0.70 +0.1
4,201,919 - Pf6N2E2_3608 0.70 -0.3
4,201,933 + Pf6N2E2_3608 0.70 +0.2
4,201,964 + Pf6N2E2_3608 0.72 +0.6
4,201,964 + Pf6N2E2_3608 0.72 +1.1
4,201,964 + Pf6N2E2_3608 0.72 +0.2
4,201,964 + Pf6N2E2_3608 0.72 +0.1
4,201,967 + Pf6N2E2_3608 0.72 +0.3
4,201,967 + Pf6N2E2_3608 0.72 +0.8
4,201,967 + Pf6N2E2_3608 0.72 +0.6
4,201,967 + Pf6N2E2_3608 0.72 +0.4
4,201,967 + Pf6N2E2_3608 0.72 +0.5
4,201,967 + Pf6N2E2_3608 0.72 -1.2
4,201,968 - Pf6N2E2_3608 0.72 +1.1
4,201,968 - Pf6N2E2_3608 0.72 +0.3
4,201,968 - Pf6N2E2_3608 0.72 +0.6
4,201,968 - Pf6N2E2_3608 0.72 +0.0
4,201,968 - Pf6N2E2_3608 0.72 +0.6
4,202,105 + Pf6N2E2_3608 0.80 -0.5
4,202,105 + Pf6N2E2_3608 0.80 +0.8
4,202,109 + Pf6N2E2_3608 0.80 +1.1
4,202,109 + Pf6N2E2_3608 0.80 -0.0
4,202,124 + Pf6N2E2_3608 0.81 +0.1
4,202,124 + Pf6N2E2_3608 0.81 +0.6
4,202,124 + Pf6N2E2_3608 0.81 -0.1
4,202,125 - Pf6N2E2_3608 0.81 -0.5
4,202,125 - Pf6N2E2_3608 0.81 +1.1
4,202,125 - Pf6N2E2_3608 0.81 +0.3
4,202,125 - Pf6N2E2_3608 0.81 -0.3
4,202,167 + Pf6N2E2_3608 0.83 +0.2
4,202,167 + Pf6N2E2_3608 0.83 +0.5
4,202,167 + Pf6N2E2_3608 0.83 +0.3
4,202,167 + Pf6N2E2_3608 0.83 -0.8
4,202,167 + Pf6N2E2_3608 0.83 +0.2
4,202,168 - Pf6N2E2_3608 0.83 -0.1
4,202,168 - Pf6N2E2_3608 0.83 +0.2
4,202,184 + Pf6N2E2_3608 0.84 +0.3
4,202,184 + Pf6N2E2_3608 0.84 +0.1
4,202,185 - Pf6N2E2_3608 0.84 +1.0
4,202,185 - Pf6N2E2_3608 0.84 +0.6
4,202,185 - Pf6N2E2_3608 0.84 +0.2
4,202,420 - -1.2
4,202,420 - +0.1
4,202,533 + -0.9
4,202,533 + -0.1
4,202,533 + +0.2
4,202,533 + +0.4
4,202,534 - -0.2
4,202,570 + -0.0
4,202,584 - -0.5
4,202,607 + +0.2
4,202,607 + +0.2
4,202,607 + -0.5
4,202,608 - +1.0
4,202,608 - +0.1
4,202,608 - +0.1
4,202,608 - -0.2
4,202,608 - +0.9
4,202,608 - -0.2
4,202,611 + +0.8
4,202,611 + -0.4
4,202,611 + -0.0
4,202,611 + -0.8
4,202,612 - -0.4
4,202,612 - +0.4
4,202,612 - -1.5
4,202,612 - -0.5
4,202,612 - +1.1
4,202,627 + +0.3
4,202,627 + -0.2
4,202,627 + +0.6
4,202,627 + +0.8
4,202,627 + -0.9
4,202,628 - -0.8
4,202,628 - +0.5
4,202,657 + +0.2
4,204,074 - -0.9
4,204,074 - -0.3
4,204,220 - Pf6N2E2_3610 0.14 -2.7
4,204,251 - Pf6N2E2_3610 0.16 -3.0
4,204,453 - Pf6N2E2_3610 0.34 +1.1
4,204,738 - Pf6N2E2_3610 0.57 -3.4
4,204,738 - Pf6N2E2_3610 0.57 -3.6
4,204,738 - Pf6N2E2_3610 0.57 -1.7
4,204,738 - Pf6N2E2_3610 0.57 -0.3
4,204,738 - Pf6N2E2_3610 0.57 -3.5
4,204,849 - Pf6N2E2_3610 0.67 -4.7
4,204,849 - Pf6N2E2_3610 0.67 -1.8

Or see this region's nucleotide sequence