Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3602

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3601 and Pf6N2E2_3602 are separated by 117 nucleotidesPf6N2E2_3602 and Pf6N2E2_3603 are separated by 18 nucleotidesPf6N2E2_3603 and Pf6N2E2_3604 are separated by 36 nucleotides Pf6N2E2_3601 - Replicative DNA helicase (EC 3.6.1.-), at 4,192,567 to 4,193,964 _3601 Pf6N2E2_3602 - LSU ribosomal protein L9p, at 4,194,082 to 4,194,528 _3602 Pf6N2E2_3603 - FIG003573: hypothetical protein, at 4,194,547 to 4,195,437 _3603 Pf6N2E2_3604 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 4,195,474 to 4,195,704 _3604 Position (kb) 4194 4195Strain fitness (log2 ratio) -1 0 1at 4194.083 kb on + strandat 4194.158 kb on - strand, within Pf6N2E2_3602at 4194.444 kb on - strand, within Pf6N2E2_3602at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.680 kb on - strand, within Pf6N2E2_3603at 4194.897 kb on - strand, within Pf6N2E2_3603at 4194.897 kb on - strand, within Pf6N2E2_3603at 4194.897 kb on - strand, within Pf6N2E2_3603at 4195.106 kb on - strand, within Pf6N2E2_3603

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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4,194,083 + +0.1
4,194,158 - Pf6N2E2_3602 0.17 +1.1
4,194,444 - Pf6N2E2_3602 0.81 +1.1
4,194,678 - Pf6N2E2_3603 0.15 -1.0
4,194,678 - Pf6N2E2_3603 0.15 -1.0
4,194,678 - Pf6N2E2_3603 0.15 -0.5
4,194,678 - Pf6N2E2_3603 0.15 -1.7
4,194,678 - Pf6N2E2_3603 0.15 +0.9
4,194,678 - Pf6N2E2_3603 0.15 -0.4
4,194,678 - Pf6N2E2_3603 0.15 -1.5
4,194,678 - Pf6N2E2_3603 0.15 +0.6
4,194,678 - Pf6N2E2_3603 0.15 -1.2
4,194,678 - Pf6N2E2_3603 0.15 +1.1
4,194,678 - Pf6N2E2_3603 0.15 +0.3
4,194,678 - Pf6N2E2_3603 0.15 +1.1
4,194,678 - Pf6N2E2_3603 0.15 -0.7
4,194,678 - Pf6N2E2_3603 0.15 -0.4
4,194,680 - Pf6N2E2_3603 0.15 -0.2
4,194,897 - Pf6N2E2_3603 0.39 -0.5
4,194,897 - Pf6N2E2_3603 0.39 +1.2
4,194,897 - Pf6N2E2_3603 0.39 -0.5
4,195,106 - Pf6N2E2_3603 0.63 +1.1

Or see this region's nucleotide sequence