Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3115

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3113 and Pf6N2E2_3114 are separated by 144 nucleotidesPf6N2E2_3114 and Pf6N2E2_3115 are separated by 101 nucleotidesPf6N2E2_3115 and Pf6N2E2_3116 are separated by 108 nucleotides Pf6N2E2_3113 - Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110, at 3,601,452 to 3,602,006 _3113 Pf6N2E2_3114 - Transcriptional regulator, TetR family, at 3,602,151 to 3,602,867 _3114 Pf6N2E2_3115 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 3,602,969 to 3,604,471 _3115 Pf6N2E2_3116 - Peptide chain release factor 2; programmed frameshift-containing, at 3,604,580 to 3,605,767 _3116 Position (kb) 3602 3603 3604 3605Strain fitness (log2 ratio) -3 -2 -1 0 1at 3602.018 kb on - strandat 3602.133 kb on + strandat 3602.134 kb on - strandat 3602.134 kb on - strandat 3602.152 kb on + strandat 3602.152 kb on + strandat 3602.152 kb on + strandat 3602.153 kb on - strandat 3602.166 kb on + strandat 3602.166 kb on + strandat 3602.167 kb on - strandat 3602.180 kb on - strandat 3602.180 kb on - strandat 3602.180 kb on - strandat 3602.180 kb on - strandat 3602.180 kb on - strandat 3602.201 kb on + strandat 3602.201 kb on + strandat 3602.201 kb on + strandat 3602.201 kb on + strandat 3602.202 kb on - strandat 3602.202 kb on - strandat 3602.202 kb on - strandat 3602.245 kb on + strand, within Pf6N2E2_3114at 3602.310 kb on + strand, within Pf6N2E2_3114at 3602.311 kb on - strand, within Pf6N2E2_3114at 3602.425 kb on + strand, within Pf6N2E2_3114at 3602.426 kb on - strand, within Pf6N2E2_3114at 3602.458 kb on + strand, within Pf6N2E2_3114at 3602.479 kb on - strand, within Pf6N2E2_3114at 3602.525 kb on - strand, within Pf6N2E2_3114at 3602.525 kb on - strand, within Pf6N2E2_3114at 3602.599 kb on + strand, within Pf6N2E2_3114at 3602.599 kb on + strand, within Pf6N2E2_3114at 3602.599 kb on + strand, within Pf6N2E2_3114at 3602.599 kb on + strand, within Pf6N2E2_3114at 3602.600 kb on - strand, within Pf6N2E2_3114at 3602.600 kb on - strand, within Pf6N2E2_3114at 3602.600 kb on - strand, within Pf6N2E2_3114at 3602.600 kb on - strand, within Pf6N2E2_3114at 3602.600 kb on - strand, within Pf6N2E2_3114at 3602.644 kb on + strand, within Pf6N2E2_3114at 3602.645 kb on - strand, within Pf6N2E2_3114at 3602.645 kb on - strand, within Pf6N2E2_3114at 3602.647 kb on + strand, within Pf6N2E2_3114at 3602.647 kb on + strand, within Pf6N2E2_3114at 3602.647 kb on + strand, within Pf6N2E2_3114at 3602.647 kb on + strand, within Pf6N2E2_3114at 3602.648 kb on - strand, within Pf6N2E2_3114at 3602.648 kb on - strand, within Pf6N2E2_3114at 3602.648 kb on - strand, within Pf6N2E2_3114at 3602.907 kb on + strandat 3602.907 kb on + strandat 3602.908 kb on - strandat 3602.908 kb on - strandat 3602.915 kb on + strandat 3602.916 kb on - strandat 3602.958 kb on - strandat 3602.970 kb on + strandat 3602.971 kb on - strandat 3602.971 kb on - strandat 3602.971 kb on - strandat 3602.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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3,602,018 - -2.2
3,602,133 + -0.6
3,602,134 - +0.3
3,602,134 - +0.4
3,602,152 + -0.2
3,602,152 + +0.1
3,602,152 + -1.1
3,602,153 - -0.5
3,602,166 + +0.5
3,602,166 + +0.5
3,602,167 - -0.4
3,602,180 - -1.0
3,602,180 - -0.1
3,602,180 - -1.2
3,602,180 - -0.1
3,602,180 - +0.0
3,602,201 + -0.0
3,602,201 + -0.5
3,602,201 + -0.3
3,602,201 + +0.2
3,602,202 - -0.8
3,602,202 - -1.1
3,602,202 - -0.5
3,602,245 + Pf6N2E2_3114 0.13 -0.1
3,602,310 + Pf6N2E2_3114 0.22 -0.5
3,602,311 - Pf6N2E2_3114 0.22 -1.3
3,602,425 + Pf6N2E2_3114 0.38 -0.2
3,602,426 - Pf6N2E2_3114 0.38 +0.3
3,602,458 + Pf6N2E2_3114 0.43 +0.4
3,602,479 - Pf6N2E2_3114 0.46 +0.4
3,602,525 - Pf6N2E2_3114 0.52 +0.4
3,602,525 - Pf6N2E2_3114 0.52 +1.1
3,602,599 + Pf6N2E2_3114 0.62 -0.5
3,602,599 + Pf6N2E2_3114 0.62 -1.1
3,602,599 + Pf6N2E2_3114 0.62 -1.0
3,602,599 + Pf6N2E2_3114 0.62 -1.2
3,602,600 - Pf6N2E2_3114 0.63 +0.2
3,602,600 - Pf6N2E2_3114 0.63 +0.2
3,602,600 - Pf6N2E2_3114 0.63 +0.1
3,602,600 - Pf6N2E2_3114 0.63 +0.4
3,602,600 - Pf6N2E2_3114 0.63 +0.2
3,602,644 + Pf6N2E2_3114 0.69 -0.3
3,602,645 - Pf6N2E2_3114 0.69 -1.8
3,602,645 - Pf6N2E2_3114 0.69 +0.1
3,602,647 + Pf6N2E2_3114 0.69 +0.7
3,602,647 + Pf6N2E2_3114 0.69 -0.7
3,602,647 + Pf6N2E2_3114 0.69 -1.8
3,602,647 + Pf6N2E2_3114 0.69 -0.1
3,602,648 - Pf6N2E2_3114 0.69 -2.1
3,602,648 - Pf6N2E2_3114 0.69 -3.0
3,602,648 - Pf6N2E2_3114 0.69 -0.7
3,602,907 + -0.4
3,602,907 + -1.8
3,602,908 - -0.1
3,602,908 - +0.1
3,602,915 + -0.0
3,602,916 - -0.0
3,602,958 - -0.1
3,602,970 + +1.1
3,602,971 - +0.7
3,602,971 - -0.1
3,602,971 - -0.6
3,602,971 - -0.3

Or see this region's nucleotide sequence