Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3113 and Pf6N2E2_3114 are separated by 144 nucleotides Pf6N2E2_3114 and Pf6N2E2_3115 are separated by 101 nucleotides Pf6N2E2_3115 and Pf6N2E2_3116 are separated by 108 nucleotides
Pf6N2E2_3113 - Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110, at 3,601,452 to 3,602,006
_3113
Pf6N2E2_3114 - Transcriptional regulator, TetR family, at 3,602,151 to 3,602,867
_3114
Pf6N2E2_3115 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 3,602,969 to 3,604,471
_3115
Pf6N2E2_3116 - Peptide chain release factor 2; programmed frameshift-containing, at 3,604,580 to 3,605,767
_3116
Position (kb)
3602
3603
3604
3605 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3602.018 kb on - strand at 3602.133 kb on + strand at 3602.134 kb on - strand at 3602.134 kb on - strand at 3602.152 kb on + strand at 3602.152 kb on + strand at 3602.152 kb on + strand at 3602.153 kb on - strand at 3602.166 kb on + strand at 3602.166 kb on + strand at 3602.167 kb on - strand at 3602.180 kb on - strand at 3602.180 kb on - strand at 3602.180 kb on - strand at 3602.180 kb on - strand at 3602.180 kb on - strand at 3602.201 kb on + strand at 3602.201 kb on + strand at 3602.201 kb on + strand at 3602.201 kb on + strand at 3602.202 kb on - strand at 3602.202 kb on - strand at 3602.202 kb on - strand at 3602.245 kb on + strand, within Pf6N2E2_3114 at 3602.310 kb on + strand, within Pf6N2E2_3114 at 3602.311 kb on - strand, within Pf6N2E2_3114 at 3602.425 kb on + strand, within Pf6N2E2_3114 at 3602.426 kb on - strand, within Pf6N2E2_3114 at 3602.458 kb on + strand, within Pf6N2E2_3114 at 3602.479 kb on - strand, within Pf6N2E2_3114 at 3602.525 kb on - strand, within Pf6N2E2_3114 at 3602.525 kb on - strand, within Pf6N2E2_3114 at 3602.599 kb on + strand, within Pf6N2E2_3114 at 3602.599 kb on + strand, within Pf6N2E2_3114 at 3602.599 kb on + strand, within Pf6N2E2_3114 at 3602.599 kb on + strand, within Pf6N2E2_3114 at 3602.600 kb on - strand, within Pf6N2E2_3114 at 3602.600 kb on - strand, within Pf6N2E2_3114 at 3602.600 kb on - strand, within Pf6N2E2_3114 at 3602.600 kb on - strand, within Pf6N2E2_3114 at 3602.600 kb on - strand, within Pf6N2E2_3114 at 3602.644 kb on + strand, within Pf6N2E2_3114 at 3602.645 kb on - strand, within Pf6N2E2_3114 at 3602.645 kb on - strand, within Pf6N2E2_3114 at 3602.647 kb on + strand, within Pf6N2E2_3114 at 3602.647 kb on + strand, within Pf6N2E2_3114 at 3602.647 kb on + strand, within Pf6N2E2_3114 at 3602.647 kb on + strand, within Pf6N2E2_3114 at 3602.648 kb on - strand, within Pf6N2E2_3114 at 3602.648 kb on - strand, within Pf6N2E2_3114 at 3602.648 kb on - strand, within Pf6N2E2_3114 at 3602.907 kb on + strand at 3602.907 kb on + strand at 3602.908 kb on - strand at 3602.908 kb on - strand at 3602.915 kb on + strand at 3602.916 kb on - strand at 3602.958 kb on - strand at 3602.970 kb on + strand at 3602.971 kb on - strand at 3602.971 kb on - strand at 3602.971 kb on - strand at 3602.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 3,602,018 - -2.2 3,602,133 + -0.6 3,602,134 - +0.3 3,602,134 - +0.4 3,602,152 + -0.2 3,602,152 + +0.1 3,602,152 + -1.1 3,602,153 - -0.5 3,602,166 + +0.5 3,602,166 + +0.5 3,602,167 - -0.4 3,602,180 - -1.0 3,602,180 - -0.1 3,602,180 - -1.2 3,602,180 - -0.1 3,602,180 - +0.0 3,602,201 + -0.0 3,602,201 + -0.5 3,602,201 + -0.3 3,602,201 + +0.2 3,602,202 - -0.8 3,602,202 - -1.1 3,602,202 - -0.5 3,602,245 + Pf6N2E2_3114 0.13 -0.1 3,602,310 + Pf6N2E2_3114 0.22 -0.5 3,602,311 - Pf6N2E2_3114 0.22 -1.3 3,602,425 + Pf6N2E2_3114 0.38 -0.2 3,602,426 - Pf6N2E2_3114 0.38 +0.3 3,602,458 + Pf6N2E2_3114 0.43 +0.4 3,602,479 - Pf6N2E2_3114 0.46 +0.4 3,602,525 - Pf6N2E2_3114 0.52 +0.4 3,602,525 - Pf6N2E2_3114 0.52 +1.1 3,602,599 + Pf6N2E2_3114 0.62 -0.5 3,602,599 + Pf6N2E2_3114 0.62 -1.1 3,602,599 + Pf6N2E2_3114 0.62 -1.0 3,602,599 + Pf6N2E2_3114 0.62 -1.2 3,602,600 - Pf6N2E2_3114 0.63 +0.2 3,602,600 - Pf6N2E2_3114 0.63 +0.2 3,602,600 - Pf6N2E2_3114 0.63 +0.1 3,602,600 - Pf6N2E2_3114 0.63 +0.4 3,602,600 - Pf6N2E2_3114 0.63 +0.2 3,602,644 + Pf6N2E2_3114 0.69 -0.3 3,602,645 - Pf6N2E2_3114 0.69 -1.8 3,602,645 - Pf6N2E2_3114 0.69 +0.1 3,602,647 + Pf6N2E2_3114 0.69 +0.7 3,602,647 + Pf6N2E2_3114 0.69 -0.7 3,602,647 + Pf6N2E2_3114 0.69 -1.8 3,602,647 + Pf6N2E2_3114 0.69 -0.1 3,602,648 - Pf6N2E2_3114 0.69 -2.1 3,602,648 - Pf6N2E2_3114 0.69 -3.0 3,602,648 - Pf6N2E2_3114 0.69 -0.7 3,602,907 + -0.4 3,602,907 + -1.8 3,602,908 - -0.1 3,602,908 - +0.1 3,602,915 + -0.0 3,602,916 - -0.0 3,602,958 - -0.1 3,602,970 + +1.1 3,602,971 - +0.7 3,602,971 - -0.1 3,602,971 - -0.6 3,602,971 - -0.3
Or see this region's nucleotide sequence