Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_286

Experiment: RCH2_defined

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_284 and Pf6N2E2_285 are separated by 248 nucleotidesPf6N2E2_285 and Pf6N2E2_286 overlap by 4 nucleotidesPf6N2E2_286 and Pf6N2E2_287 are separated by 59 nucleotides Pf6N2E2_284 - Adenylosuccinate lyase (EC 4.3.2.2), at 350,256 to 351,626 _284 Pf6N2E2_285 - FIG002903: a protein of unknown function perhaps involved in purine metabolism, at 351,875 to 352,498 _285 Pf6N2E2_286 - tRNA-specific 2-thiouridylase MnmA, at 352,495 to 353,619 _286 Pf6N2E2_287 - Nudix-like NDP and NTP phosphohydrolase YmfB, at 353,679 to 354,125 _287 Position (kb) 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 351.713 kb on - strandat 351.732 kb on + strandat 351.732 kb on + strandat 351.732 kb on + strandat 351.732 kb on + strandat 351.733 kb on - strandat 351.733 kb on - strandat 351.733 kb on - strandat 351.733 kb on - strandat 351.733 kb on - strandat 351.733 kb on - strandat 351.733 kb on - strandat 351.736 kb on + strandat 351.736 kb on + strandat 351.736 kb on + strandat 351.737 kb on - strandat 351.737 kb on - strandat 351.737 kb on - strandat 351.737 kb on - strandat 351.739 kb on + strandat 351.739 kb on + strandat 351.740 kb on - strandat 351.876 kb on + strandat 351.876 kb on + strandat 351.877 kb on - strandat 352.075 kb on + strand, within Pf6N2E2_285at 352.093 kb on - strand, within Pf6N2E2_285at 352.242 kb on + strand, within Pf6N2E2_285at 352.306 kb on - strand, within Pf6N2E2_285at 352.338 kb on + strand, within Pf6N2E2_285at 352.339 kb on - strand, within Pf6N2E2_285at 352.394 kb on + strand, within Pf6N2E2_285at 353.728 kb on + strand, within Pf6N2E2_287at 353.728 kb on + strand, within Pf6N2E2_287at 353.729 kb on - strand, within Pf6N2E2_287at 353.729 kb on - strand, within Pf6N2E2_287at 353.729 kb on - strand, within Pf6N2E2_287at 353.836 kb on + strand, within Pf6N2E2_287at 353.837 kb on - strand, within Pf6N2E2_287at 353.837 kb on - strand, within Pf6N2E2_287at 353.884 kb on + strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.912 kb on - strand, within Pf6N2E2_287at 353.912 kb on - strand, within Pf6N2E2_287at 353.912 kb on - strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 354.136 kb on - strandat 354.136 kb on - strandat 354.184 kb on + strandat 354.185 kb on - strandat 354.206 kb on - strandat 354.281 kb on - strandat 354.281 kb on - strandat 354.281 kb on - strandat 354.281 kb on - strandat 354.306 kb on - strandat 354.314 kb on + strandat 354.315 kb on - strandat 354.315 kb on - strandat 354.357 kb on - strandat 354.383 kb on - strandat 354.423 kb on + strandat 354.496 kb on + strandat 354.617 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
remove
351,713 - -0.8
351,732 + -0.1
351,732 + -0.4
351,732 + -1.1
351,732 + +1.4
351,733 - +1.2
351,733 - -0.1
351,733 - +0.5
351,733 - -2.8
351,733 - +0.1
351,733 - +0.8
351,733 - -0.4
351,736 + -0.2
351,736 + -1.6
351,736 + -0.9
351,737 - +1.1
351,737 - -1.1
351,737 - -1.3
351,737 - -0.7
351,739 + -1.7
351,739 + -1.1
351,740 - -0.5
351,876 + +0.0
351,876 + -0.4
351,877 - -0.1
352,075 + Pf6N2E2_285 0.32 +0.1
352,093 - Pf6N2E2_285 0.35 +0.9
352,242 + Pf6N2E2_285 0.59 -0.0
352,306 - Pf6N2E2_285 0.69 +1.4
352,338 + Pf6N2E2_285 0.74 -0.4
352,339 - Pf6N2E2_285 0.74 +0.4
352,394 + Pf6N2E2_285 0.83 -1.2
353,728 + Pf6N2E2_287 0.11 +2.2
353,728 + Pf6N2E2_287 0.11 +0.5
353,729 - Pf6N2E2_287 0.11 -0.3
353,729 - Pf6N2E2_287 0.11 -0.1
353,729 - Pf6N2E2_287 0.11 -0.7
353,836 + Pf6N2E2_287 0.35 +0.4
353,837 - Pf6N2E2_287 0.35 +0.8
353,837 - Pf6N2E2_287 0.35 +0.5
353,884 + Pf6N2E2_287 0.46 -0.0
353,885 - Pf6N2E2_287 0.46 +0.5
353,885 - Pf6N2E2_287 0.46 -0.8
353,885 - Pf6N2E2_287 0.46 +0.7
353,885 - Pf6N2E2_287 0.46 -1.1
353,912 - Pf6N2E2_287 0.52 +0.1
353,912 - Pf6N2E2_287 0.52 -1.2
353,912 - Pf6N2E2_287 0.52 -1.9
353,917 + Pf6N2E2_287 0.53 +0.1
353,917 + Pf6N2E2_287 0.53 +0.9
353,917 + Pf6N2E2_287 0.53 -0.1
353,917 + Pf6N2E2_287 0.53 -1.8
353,917 + Pf6N2E2_287 0.53 -0.0
353,917 + Pf6N2E2_287 0.53 -0.0
353,917 + Pf6N2E2_287 0.53 +2.6
353,917 + Pf6N2E2_287 0.53 +1.6
353,917 + Pf6N2E2_287 0.53 +0.8
353,917 + Pf6N2E2_287 0.53 -1.3
353,917 + Pf6N2E2_287 0.53 +0.4
353,917 + Pf6N2E2_287 0.53 -0.0
353,917 + Pf6N2E2_287 0.53 -1.1
353,917 + Pf6N2E2_287 0.53 -0.5
353,917 + Pf6N2E2_287 0.53 +0.6
353,917 + Pf6N2E2_287 0.53 +1.5
353,917 + Pf6N2E2_287 0.53 +1.6
353,917 + Pf6N2E2_287 0.53 -0.2
353,917 + Pf6N2E2_287 0.53 -1.1
353,917 + Pf6N2E2_287 0.53 -0.7
353,917 + Pf6N2E2_287 0.53 +0.6
353,917 + Pf6N2E2_287 0.53 -1.2
353,917 + Pf6N2E2_287 0.53 +0.8
353,917 + Pf6N2E2_287 0.53 -0.6
353,917 + Pf6N2E2_287 0.53 +0.2
353,917 + Pf6N2E2_287 0.53 +0.4
353,917 + Pf6N2E2_287 0.53 -0.0
353,918 - Pf6N2E2_287 0.53 +0.5
353,918 - Pf6N2E2_287 0.53 +0.2
353,918 - Pf6N2E2_287 0.53 +0.1
353,918 - Pf6N2E2_287 0.53 +0.3
353,918 - Pf6N2E2_287 0.53 +0.6
353,918 - Pf6N2E2_287 0.53 +1.1
353,918 - Pf6N2E2_287 0.53 -0.0
353,918 - Pf6N2E2_287 0.53 -0.1
353,918 - Pf6N2E2_287 0.53 +0.1
353,918 - Pf6N2E2_287 0.53 -0.8
353,918 - Pf6N2E2_287 0.53 +0.5
353,918 - Pf6N2E2_287 0.53 +0.3
353,918 - Pf6N2E2_287 0.53 -0.3
353,919 + Pf6N2E2_287 0.54 -0.9
353,919 + Pf6N2E2_287 0.54 -0.6
353,919 + Pf6N2E2_287 0.54 -1.1
353,919 + Pf6N2E2_287 0.54 -0.3
353,919 + Pf6N2E2_287 0.54 -0.0
353,919 + Pf6N2E2_287 0.54 +0.1
353,919 + Pf6N2E2_287 0.54 +1.5
353,919 + Pf6N2E2_287 0.54 -0.9
353,919 + Pf6N2E2_287 0.54 -1.5
353,919 + Pf6N2E2_287 0.54 -1.5
353,920 - Pf6N2E2_287 0.54 -0.1
353,920 - Pf6N2E2_287 0.54 -0.8
353,920 - Pf6N2E2_287 0.54 -0.3
353,920 - Pf6N2E2_287 0.54 -0.4
354,136 - +0.5
354,136 - -1.3
354,184 + -0.8
354,185 - +0.1
354,206 - +0.2
354,281 - +0.7
354,281 - +1.0
354,281 - +2.1
354,281 - +0.3
354,306 - +0.9
354,314 + +1.1
354,315 - -0.2
354,315 - -0.9
354,357 - -0.1
354,383 - -0.3
354,423 + +0.8
354,496 + -0.4
354,617 - +0.0

Or see this region's nucleotide sequence