Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2676

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2675 and Pf6N2E2_2676 are separated by 151 nucleotidesPf6N2E2_2676 and Pf6N2E2_2677 overlap by 72 nucleotides Pf6N2E2_2675 - ATP-dependent RNA helicase SrmB, at 3,163,442 to 3,164,788 _2675 Pf6N2E2_2676 - hypothetical protein, at 3,164,940 to 3,165,053 _2676 Pf6N2E2_2677 - Small-conductance mechanosensitive channel, at 3,164,982 to 3,166,280 _2677 Position (kb) 3164 3165 3166Strain fitness (log2 ratio) -2 -1 0 1at 3164.827 kb on - strandat 3164.866 kb on - strandat 3164.932 kb on + strandat 3164.932 kb on + strandat 3164.932 kb on + strandat 3164.942 kb on - strandat 3164.964 kb on - strand, within Pf6N2E2_2676at 3164.964 kb on - strand, within Pf6N2E2_2676at 3165.366 kb on + strand, within Pf6N2E2_2677at 3165.366 kb on + strand, within Pf6N2E2_2677at 3165.408 kb on + strand, within Pf6N2E2_2677at 3165.408 kb on + strand, within Pf6N2E2_2677at 3165.408 kb on + strand, within Pf6N2E2_2677at 3165.408 kb on + strand, within Pf6N2E2_2677at 3165.408 kb on + strand, within Pf6N2E2_2677at 3165.408 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.435 kb on + strand, within Pf6N2E2_2677at 3165.436 kb on - strand, within Pf6N2E2_2677at 3165.436 kb on - strand, within Pf6N2E2_2677at 3165.436 kb on - strand, within Pf6N2E2_2677at 3165.436 kb on - strand, within Pf6N2E2_2677at 3165.436 kb on - strand, within Pf6N2E2_2677at 3165.436 kb on - strand, within Pf6N2E2_2677at 3165.436 kb on - strand, within Pf6N2E2_2677at 3165.439 kb on + strand, within Pf6N2E2_2677at 3165.439 kb on + strand, within Pf6N2E2_2677at 3165.440 kb on - strand, within Pf6N2E2_2677at 3165.537 kb on + strand, within Pf6N2E2_2677at 3165.538 kb on - strand, within Pf6N2E2_2677at 3165.538 kb on - strand, within Pf6N2E2_2677at 3165.870 kb on + strand, within Pf6N2E2_2677at 3165.871 kb on - strand, within Pf6N2E2_2677at 3165.982 kb on - strand, within Pf6N2E2_2677at 3165.994 kb on - strand, within Pf6N2E2_2677at 3165.994 kb on - strand, within Pf6N2E2_2677

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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3,164,827 - -0.0
3,164,866 - -0.4
3,164,932 + -2.0
3,164,932 + +0.5
3,164,932 + -1.4
3,164,942 - +0.6
3,164,964 - Pf6N2E2_2676 0.21 -0.5
3,164,964 - Pf6N2E2_2676 0.21 +1.2
3,165,366 + Pf6N2E2_2677 0.30 -0.5
3,165,366 + Pf6N2E2_2677 0.30 -1.8
3,165,408 + Pf6N2E2_2677 0.33 -0.1
3,165,408 + Pf6N2E2_2677 0.33 +0.4
3,165,408 + Pf6N2E2_2677 0.33 -0.4
3,165,408 + Pf6N2E2_2677 0.33 -1.4
3,165,408 + Pf6N2E2_2677 0.33 -0.2
3,165,408 + Pf6N2E2_2677 0.33 -1.4
3,165,435 + Pf6N2E2_2677 0.35 -0.1
3,165,435 + Pf6N2E2_2677 0.35 -0.1
3,165,435 + Pf6N2E2_2677 0.35 +0.2
3,165,435 + Pf6N2E2_2677 0.35 +0.3
3,165,435 + Pf6N2E2_2677 0.35 -0.8
3,165,435 + Pf6N2E2_2677 0.35 +0.5
3,165,435 + Pf6N2E2_2677 0.35 +1.3
3,165,435 + Pf6N2E2_2677 0.35 +0.7
3,165,435 + Pf6N2E2_2677 0.35 -0.2
3,165,435 + Pf6N2E2_2677 0.35 +0.5
3,165,435 + Pf6N2E2_2677 0.35 +0.1
3,165,435 + Pf6N2E2_2677 0.35 -0.2
3,165,436 - Pf6N2E2_2677 0.35 -0.9
3,165,436 - Pf6N2E2_2677 0.35 +0.0
3,165,436 - Pf6N2E2_2677 0.35 -0.5
3,165,436 - Pf6N2E2_2677 0.35 -0.4
3,165,436 - Pf6N2E2_2677 0.35 -0.3
3,165,436 - Pf6N2E2_2677 0.35 -1.1
3,165,436 - Pf6N2E2_2677 0.35 -0.7
3,165,439 + Pf6N2E2_2677 0.35 -0.2
3,165,439 + Pf6N2E2_2677 0.35 -0.2
3,165,440 - Pf6N2E2_2677 0.35 -0.3
3,165,537 + Pf6N2E2_2677 0.43 +1.2
3,165,538 - Pf6N2E2_2677 0.43 -0.1
3,165,538 - Pf6N2E2_2677 0.43 +0.3
3,165,870 + Pf6N2E2_2677 0.68 -0.5
3,165,871 - Pf6N2E2_2677 0.68 +0.7
3,165,982 - Pf6N2E2_2677 0.77 -0.1
3,165,994 - Pf6N2E2_2677 0.78 +1.2
3,165,994 - Pf6N2E2_2677 0.78 -0.7

Or see this region's nucleotide sequence