Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2556

Experiment: RCH2_defined

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2555 and Pf6N2E2_2556 are separated by 3 nucleotidesPf6N2E2_2556 and Pf6N2E2_2557 overlap by 4 nucleotidesPf6N2E2_2557 and Pf6N2E2_2558 overlap by 4 nucleotides Pf6N2E2_2555 - Cytochrome c heme lyase subunit CcmF, at 3,014,864 to 3,016,852 _2555 Pf6N2E2_2556 - Cytochrome c-type biogenesis protein CcmE, heme chaperone, at 3,016,856 to 3,017,311 _2556 Pf6N2E2_2557 - Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE, at 3,017,308 to 3,017,484 _2557 Pf6N2E2_2558 - Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE, at 3,017,481 to 3,018,236 _2558 Position (kb) 3016 3017 3018Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3016.835 kb on - strandat 3018.291 kb on - strandat 3018.291 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
remove
3,016,835 - -4.9
3,018,291 - -0.0
3,018,291 - +0.5

Or see this region's nucleotide sequence