Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2552 and Pf6N2E2_2553 overlap by 8 nucleotides Pf6N2E2_2553 and Pf6N2E2_2554 overlap by 4 nucleotides Pf6N2E2_2554 and Pf6N2E2_2555 overlap by 4 nucleotides
Pf6N2E2_2552 - Cytochrome c heme lyase subunit CcmH, at 3,012,666 to 3,013,868
_2552
Pf6N2E2_2553 - Cytochrome c heme lyase subunit CcmL, at 3,013,861 to 3,014,334
_2553
Pf6N2E2_2554 - Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase, at 3,014,331 to 3,014,867
_2554
Pf6N2E2_2555 - Cytochrome c heme lyase subunit CcmF, at 3,014,864 to 3,016,852
_2555
Position (kb)
3013
3014
3015 Strain fitness (log2 ratio)
-2
-1
0
1 at 3013.160 kb on - strand, within Pf6N2E2_2552 at 3013.257 kb on - strand, within Pf6N2E2_2552 at 3013.390 kb on + strand, within Pf6N2E2_2552 at 3013.390 kb on + strand, within Pf6N2E2_2552 at 3013.390 kb on + strand, within Pf6N2E2_2552 at 3013.390 kb on + strand at 3013.390 kb on + strand, within Pf6N2E2_2552 at 3013.391 kb on - strand, within Pf6N2E2_2552 at 3013.391 kb on - strand, within Pf6N2E2_2552 at 3013.391 kb on - strand, within Pf6N2E2_2552 at 3013.391 kb on - strand, within Pf6N2E2_2552 at 3013.391 kb on - strand, within Pf6N2E2_2552 at 3013.394 kb on + strand, within Pf6N2E2_2552 at 3013.408 kb on + strand, within Pf6N2E2_2552 at 3013.408 kb on + strand, within Pf6N2E2_2552 at 3013.409 kb on - strand, within Pf6N2E2_2552 at 3013.541 kb on - strand, within Pf6N2E2_2552 at 3013.541 kb on - strand, within Pf6N2E2_2552 at 3013.741 kb on + strand, within Pf6N2E2_2552 at 3013.742 kb on - strand, within Pf6N2E2_2552 at 3014.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 3,013,160 - Pf6N2E2_2552 0.41 -0.2 3,013,257 - Pf6N2E2_2552 0.49 +0.9 3,013,390 + Pf6N2E2_2552 0.60 -0.3 3,013,390 + Pf6N2E2_2552 0.60 -0.1 3,013,390 + Pf6N2E2_2552 0.60 +0.0 3,013,390 + +0.2 3,013,390 + Pf6N2E2_2552 0.60 -0.0 3,013,391 - Pf6N2E2_2552 0.60 +0.5 3,013,391 - Pf6N2E2_2552 0.60 -0.1 3,013,391 - Pf6N2E2_2552 0.60 -0.6 3,013,391 - Pf6N2E2_2552 0.60 +0.3 3,013,391 - Pf6N2E2_2552 0.60 +0.2 3,013,394 + Pf6N2E2_2552 0.61 +0.0 3,013,408 + Pf6N2E2_2552 0.62 +0.1 3,013,408 + Pf6N2E2_2552 0.62 +1.1 3,013,409 - Pf6N2E2_2552 0.62 +0.2 3,013,541 - Pf6N2E2_2552 0.73 -2.2 3,013,541 - Pf6N2E2_2552 0.73 -2.1 3,013,741 + Pf6N2E2_2552 0.89 -2.5 3,013,742 - Pf6N2E2_2552 0.89 -2.7 3,014,363 - -1.8
Or see this region's nucleotide sequence