Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2383

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2382 and Pf6N2E2_2383 are separated by 108 nucleotidesPf6N2E2_2383 and Pf6N2E2_2384 are separated by 295 nucleotides Pf6N2E2_2382 - Major porin and structural outer membrane porin OprF, at 2,821,381 to 2,822,415 _2382 Pf6N2E2_2383 - DNA-directed RNA polymerase specialized sigma subunit, sigma24-like, at 2,822,524 to 2,822,910 _2383 Pf6N2E2_2384 - CmpX, at 2,823,206 to 2,824,030 _2384 Position (kb) 2822 2823Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2822.498 kb on - strandat 2822.504 kb on - strandat 2822.504 kb on - strandat 2823.095 kb on - strandat 2823.136 kb on - strandat 2823.185 kb on - strandat 2823.185 kb on - strandat 2823.185 kb on - strandat 2823.185 kb on - strandat 2823.185 kb on - strandat 2823.355 kb on - strand, within Pf6N2E2_2384at 2823.370 kb on - strand, within Pf6N2E2_2384at 2823.370 kb on - strand, within Pf6N2E2_2384at 2823.370 kb on - strand, within Pf6N2E2_2384at 2823.518 kb on - strand, within Pf6N2E2_2384at 2823.518 kb on - strand, within Pf6N2E2_2384at 2823.518 kb on - strand, within Pf6N2E2_2384at 2823.689 kb on - strand, within Pf6N2E2_2384at 2823.756 kb on - strand, within Pf6N2E2_2384at 2823.756 kb on - strand, within Pf6N2E2_2384at 2823.756 kb on - strand, within Pf6N2E2_2384

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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2,822,498 - +1.1
2,822,504 - +1.1
2,822,504 - +0.1
2,823,095 - -1.4
2,823,136 - +0.1
2,823,185 - +2.1
2,823,185 - +0.1
2,823,185 - +0.1
2,823,185 - +1.0
2,823,185 - -1.7
2,823,355 - Pf6N2E2_2384 0.18 +1.1
2,823,370 - Pf6N2E2_2384 0.20 +1.1
2,823,370 - Pf6N2E2_2384 0.20 +0.1
2,823,370 - Pf6N2E2_2384 0.20 -0.7
2,823,518 - Pf6N2E2_2384 0.38 +1.1
2,823,518 - Pf6N2E2_2384 0.38 -0.3
2,823,518 - Pf6N2E2_2384 0.38 -3.2
2,823,689 - Pf6N2E2_2384 0.59 -0.5
2,823,756 - Pf6N2E2_2384 0.67 -0.5
2,823,756 - Pf6N2E2_2384 0.67 +1.1
2,823,756 - Pf6N2E2_2384 0.67 +0.1

Or see this region's nucleotide sequence