Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1738

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1737 and Pf6N2E2_1738 are separated by 190 nucleotidesPf6N2E2_1738 and Pf6N2E2_1739 are separated by 160 nucleotides Pf6N2E2_1737 - hypothetical protein, at 2,049,751 to 2,050,389 _1737 Pf6N2E2_1738 - Transcriptional regulator, GntR family, at 2,050,580 to 2,051,254 _1738 Pf6N2E2_1739 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 2,051,415 to 2,052,698 _1739 Position (kb) 2050 2051 2052Strain fitness (log2 ratio) -1 0 1at 2049.581 kb on - strandat 2049.591 kb on + strandat 2049.592 kb on - strandat 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.883 kb on + strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.884 kb on - strand, within Pf6N2E2_1737at 2049.885 kb on + strand, within Pf6N2E2_1737at 2049.936 kb on + strand, within Pf6N2E2_1737at 2050.037 kb on + strand, within Pf6N2E2_1737at 2050.037 kb on + strand, within Pf6N2E2_1737at 2050.037 kb on + strand, within Pf6N2E2_1737at 2050.171 kb on + strand, within Pf6N2E2_1737at 2050.171 kb on + strand, within Pf6N2E2_1737at 2050.215 kb on + strand, within Pf6N2E2_1737at 2050.533 kb on - strandat 2050.744 kb on - strand, within Pf6N2E2_1738at 2051.258 kb on + strandat 2051.332 kb on - strandat 2051.336 kb on + strandat 2051.337 kb on - strandat 2051.337 kb on - strandat 2051.338 kb on + strandat 2051.417 kb on - strandat 2051.487 kb on - strandat 2051.525 kb on + strandat 2051.596 kb on + strand, within Pf6N2E2_1739at 2051.623 kb on + strand, within Pf6N2E2_1739at 2051.706 kb on - strand, within Pf6N2E2_1739at 2051.706 kb on - strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.708 kb on - strand, within Pf6N2E2_1739at 2051.734 kb on + strand, within Pf6N2E2_1739at 2051.735 kb on - strand, within Pf6N2E2_1739at 2052.161 kb on - strand, within Pf6N2E2_1739

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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2,049,581 - -0.7
2,049,591 + -0.4
2,049,592 - +0.5
2,049,883 + Pf6N2E2_1737 0.21 +0.4
2,049,883 + Pf6N2E2_1737 0.21 +1.7
2,049,883 + Pf6N2E2_1737 0.21 -0.2
2,049,883 + Pf6N2E2_1737 0.21 -0.5
2,049,884 - Pf6N2E2_1737 0.21 +1.3
2,049,884 - Pf6N2E2_1737 0.21 -1.3
2,049,884 - Pf6N2E2_1737 0.21 +0.0
2,049,884 - Pf6N2E2_1737 0.21 -0.0
2,049,885 + Pf6N2E2_1737 0.21 -0.2
2,049,936 + Pf6N2E2_1737 0.29 +1.0
2,050,037 + Pf6N2E2_1737 0.45 +0.8
2,050,037 + Pf6N2E2_1737 0.45 -0.4
2,050,037 + Pf6N2E2_1737 0.45 -0.7
2,050,171 + Pf6N2E2_1737 0.66 +0.1
2,050,171 + Pf6N2E2_1737 0.66 +0.5
2,050,215 + Pf6N2E2_1737 0.73 +0.9
2,050,533 - +0.8
2,050,744 - Pf6N2E2_1738 0.24 -0.3
2,051,258 + -1.0
2,051,332 - +0.5
2,051,336 + +1.0
2,051,337 - +0.4
2,051,337 - -0.5
2,051,338 + -0.2
2,051,417 - -0.6
2,051,487 - +0.3
2,051,525 + -0.5
2,051,596 + Pf6N2E2_1739 0.14 +0.5
2,051,623 + Pf6N2E2_1739 0.16 +0.2
2,051,706 - Pf6N2E2_1739 0.23 +0.6
2,051,706 - Pf6N2E2_1739 0.23 -0.8
2,051,707 + Pf6N2E2_1739 0.23 +0.6
2,051,707 + Pf6N2E2_1739 0.23 -1.3
2,051,707 + Pf6N2E2_1739 0.23 -0.1
2,051,707 + Pf6N2E2_1739 0.23 +0.8
2,051,708 - Pf6N2E2_1739 0.23 -0.4
2,051,734 + Pf6N2E2_1739 0.25 +0.1
2,051,735 - Pf6N2E2_1739 0.25 +0.7
2,052,161 - Pf6N2E2_1739 0.58 +0.8

Or see this region's nucleotide sequence