Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1737 and Pf6N2E2_1738 are separated by 190 nucleotides Pf6N2E2_1738 and Pf6N2E2_1739 are separated by 160 nucleotides
Pf6N2E2_1737 - hypothetical protein, at 2,049,751 to 2,050,389
_1737
Pf6N2E2_1738 - Transcriptional regulator, GntR family, at 2,050,580 to 2,051,254
_1738
Pf6N2E2_1739 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 2,051,415 to 2,052,698
_1739
Position (kb)
2050
2051
2052 Strain fitness (log2 ratio)
-1
0
1 at 2049.581 kb on - strand at 2049.591 kb on + strand at 2049.592 kb on - strand at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.883 kb on + strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.884 kb on - strand, within Pf6N2E2_1737 at 2049.885 kb on + strand, within Pf6N2E2_1737 at 2049.936 kb on + strand, within Pf6N2E2_1737 at 2050.037 kb on + strand, within Pf6N2E2_1737 at 2050.037 kb on + strand, within Pf6N2E2_1737 at 2050.037 kb on + strand, within Pf6N2E2_1737 at 2050.171 kb on + strand, within Pf6N2E2_1737 at 2050.171 kb on + strand, within Pf6N2E2_1737 at 2050.215 kb on + strand, within Pf6N2E2_1737 at 2050.533 kb on - strand at 2050.744 kb on - strand, within Pf6N2E2_1738 at 2051.258 kb on + strand at 2051.332 kb on - strand at 2051.336 kb on + strand at 2051.337 kb on - strand at 2051.337 kb on - strand at 2051.338 kb on + strand at 2051.417 kb on - strand at 2051.487 kb on - strand at 2051.525 kb on + strand at 2051.596 kb on + strand, within Pf6N2E2_1739 at 2051.623 kb on + strand, within Pf6N2E2_1739 at 2051.706 kb on - strand, within Pf6N2E2_1739 at 2051.706 kb on - strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.708 kb on - strand, within Pf6N2E2_1739 at 2051.734 kb on + strand, within Pf6N2E2_1739 at 2051.735 kb on - strand, within Pf6N2E2_1739 at 2052.161 kb on - strand, within Pf6N2E2_1739
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 2,049,581 - -0.7 2,049,591 + -0.4 2,049,592 - +0.5 2,049,883 + Pf6N2E2_1737 0.21 +0.4 2,049,883 + Pf6N2E2_1737 0.21 +1.7 2,049,883 + Pf6N2E2_1737 0.21 -0.2 2,049,883 + Pf6N2E2_1737 0.21 -0.5 2,049,884 - Pf6N2E2_1737 0.21 +1.3 2,049,884 - Pf6N2E2_1737 0.21 -1.3 2,049,884 - Pf6N2E2_1737 0.21 +0.0 2,049,884 - Pf6N2E2_1737 0.21 -0.0 2,049,885 + Pf6N2E2_1737 0.21 -0.2 2,049,936 + Pf6N2E2_1737 0.29 +1.0 2,050,037 + Pf6N2E2_1737 0.45 +0.8 2,050,037 + Pf6N2E2_1737 0.45 -0.4 2,050,037 + Pf6N2E2_1737 0.45 -0.7 2,050,171 + Pf6N2E2_1737 0.66 +0.1 2,050,171 + Pf6N2E2_1737 0.66 +0.5 2,050,215 + Pf6N2E2_1737 0.73 +0.9 2,050,533 - +0.8 2,050,744 - Pf6N2E2_1738 0.24 -0.3 2,051,258 + -1.0 2,051,332 - +0.5 2,051,336 + +1.0 2,051,337 - +0.4 2,051,337 - -0.5 2,051,338 + -0.2 2,051,417 - -0.6 2,051,487 - +0.3 2,051,525 + -0.5 2,051,596 + Pf6N2E2_1739 0.14 +0.5 2,051,623 + Pf6N2E2_1739 0.16 +0.2 2,051,706 - Pf6N2E2_1739 0.23 +0.6 2,051,706 - Pf6N2E2_1739 0.23 -0.8 2,051,707 + Pf6N2E2_1739 0.23 +0.6 2,051,707 + Pf6N2E2_1739 0.23 -1.3 2,051,707 + Pf6N2E2_1739 0.23 -0.1 2,051,707 + Pf6N2E2_1739 0.23 +0.8 2,051,708 - Pf6N2E2_1739 0.23 -0.4 2,051,734 + Pf6N2E2_1739 0.25 +0.1 2,051,735 - Pf6N2E2_1739 0.25 +0.7 2,052,161 - Pf6N2E2_1739 0.58 +0.8
Or see this region's nucleotide sequence