Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1471 and Pf6N2E2_1472 are separated by 18 nucleotides Pf6N2E2_1472 and Pf6N2E2_1473 are separated by 280 nucleotides Pf6N2E2_1473 and Pf6N2E2_1474 are separated by 23 nucleotides Pf6N2E2_1474 and Pf6N2E2_1475 are separated by 326 nucleotides
Pf6N2E2_1471 - Dienelactone hydrolase and related enzymes, at 1,722,835 to 1,723,065
_1471
Pf6N2E2_1472 - Cytochrome b561, at 1,723,084 to 1,723,635
_1472
Pf6N2E2_1473 - hypothetical protein, at 1,723,916 to 1,724,077
_1473
Pf6N2E2_1474 - SAM-dependent methyltransferases, at 1,724,101 to 1,724,697
_1474
Pf6N2E2_1475 - Arsenic resistance protein ArsH, at 1,725,024 to 1,725,758
_1475
Position (kb) 1723
1724
1725 Strain fitness (log2 ratio) -1
0
1
2
3 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1723.000 kb on + strand, within Pf6N2E2_1471 at 1723.001 kb on - strand, within Pf6N2E2_1471 at 1723.123 kb on - strand at 1723.140 kb on - strand, within Pf6N2E2_1472 at 1723.201 kb on + strand, within Pf6N2E2_1472 at 1723.202 kb on - strand, within Pf6N2E2_1472 at 1723.214 kb on + strand at 1723.215 kb on - strand, within Pf6N2E2_1472 at 1723.215 kb on - strand, within Pf6N2E2_1472 at 1723.346 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.551 kb on - strand, within Pf6N2E2_1472 at 1723.768 kb on - strand at 1723.806 kb on - strand at 1723.881 kb on - strand at 1724.003 kb on + strand, within Pf6N2E2_1473 at 1724.003 kb on + strand, within Pf6N2E2_1473 at 1724.113 kb on - strand at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.328 kb on - strand, within Pf6N2E2_1474 at 1724.334 kb on - strand, within Pf6N2E2_1474 at 1724.334 kb on - strand, within Pf6N2E2_1474 at 1724.372 kb on - strand, within Pf6N2E2_1474 at 1724.395 kb on + strand, within Pf6N2E2_1474 at 1724.396 kb on - strand, within Pf6N2E2_1474 at 1724.396 kb on - strand, within Pf6N2E2_1474 at 1724.434 kb on + strand, within Pf6N2E2_1474 at 1724.459 kb on + strand, within Pf6N2E2_1474 at 1724.459 kb on + strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.460 kb on - strand, within Pf6N2E2_1474 at 1724.560 kb on - strand, within Pf6N2E2_1474 at 1724.560 kb on - strand, within Pf6N2E2_1474 at 1724.760 kb on - strand at 1724.800 kb on - strand at 1724.848 kb on + strand at 1725.022 kb on + strand at 1725.023 kb on - strand at 1725.023 kb on - strand at 1725.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 1,722,938 - Pf6N2E2_1471 0.45 +1.7 1,722,938 - Pf6N2E2_1471 0.45 -0.2 1,722,938 - Pf6N2E2_1471 0.45 +0.4 1,722,938 - Pf6N2E2_1471 0.45 +0.7 1,723,000 + Pf6N2E2_1471 0.71 -0.4 1,723,001 - Pf6N2E2_1471 0.72 +2.0 1,723,123 - +0.9 1,723,140 - Pf6N2E2_1472 0.10 -0.1 1,723,201 + Pf6N2E2_1472 0.21 +1.3 1,723,202 - Pf6N2E2_1472 0.21 +1.3 1,723,214 + +0.0 1,723,215 - Pf6N2E2_1472 0.24 +0.3 1,723,215 - Pf6N2E2_1472 0.24 -0.1 1,723,346 + Pf6N2E2_1472 0.47 +0.0 1,723,550 + Pf6N2E2_1472 0.84 +1.0 1,723,550 + Pf6N2E2_1472 0.84 +2.2 1,723,550 + Pf6N2E2_1472 0.84 -0.9 1,723,550 + Pf6N2E2_1472 0.84 +1.6 1,723,551 - Pf6N2E2_1472 0.85 +1.0 1,723,768 - -0.9 1,723,806 - +0.9 1,723,881 - -0.3 1,724,003 + Pf6N2E2_1473 0.54 +0.3 1,724,003 + Pf6N2E2_1473 0.54 +3.5 1,724,113 - +0.4 1,724,328 - Pf6N2E2_1474 0.38 -1.2 1,724,328 - Pf6N2E2_1474 0.38 +0.4 1,724,328 - Pf6N2E2_1474 0.38 -0.8 1,724,328 - Pf6N2E2_1474 0.38 +0.6 1,724,334 - Pf6N2E2_1474 0.39 -0.2 1,724,334 - Pf6N2E2_1474 0.39 +0.4 1,724,372 - Pf6N2E2_1474 0.45 +1.4 1,724,395 + Pf6N2E2_1474 0.49 -1.0 1,724,396 - Pf6N2E2_1474 0.49 +1.3 1,724,396 - Pf6N2E2_1474 0.49 +0.8 1,724,434 + Pf6N2E2_1474 0.56 +0.4 1,724,459 + Pf6N2E2_1474 0.60 -0.8 1,724,459 + Pf6N2E2_1474 0.60 +0.0 1,724,460 - Pf6N2E2_1474 0.60 +1.4 1,724,460 - Pf6N2E2_1474 0.60 +3.5 1,724,460 - Pf6N2E2_1474 0.60 -0.6 1,724,460 - Pf6N2E2_1474 0.60 +2.1 1,724,560 - Pf6N2E2_1474 0.77 +0.7 1,724,560 - Pf6N2E2_1474 0.77 +0.5 1,724,760 - -0.7 1,724,800 - -1.4 1,724,848 + -0.4 1,725,022 + +0.7 1,725,023 - -0.2 1,725,023 - +1.0 1,725,023 - +0.4
Or see this region's nucleotide sequence