Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1374

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1373 and Pf6N2E2_1374 are separated by 214 nucleotidesPf6N2E2_1374 and Pf6N2E2_1375 are separated by 157 nucleotides Pf6N2E2_1373 - Transcriptional regulator of various polyols utilization, AraC family, at 1,610,790 to 1,611,692 _1373 Pf6N2E2_1374 - Various polyols ABC transporter, periplasmic substrate-binding protein, at 1,611,907 to 1,612,074 _1374 Pf6N2E2_1375 - Multiple polyol-specific dehydrogenase (EC 1.1.1.-), at 1,612,232 to 1,613,005 _1375 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1611.088 kb on + strand, within Pf6N2E2_1373at 1611.088 kb on + strand, within Pf6N2E2_1373at 1611.089 kb on - strand, within Pf6N2E2_1373at 1611.102 kb on - strand, within Pf6N2E2_1373at 1611.142 kb on + strand, within Pf6N2E2_1373at 1611.142 kb on + strand, within Pf6N2E2_1373at 1611.142 kb on + strand, within Pf6N2E2_1373at 1611.142 kb on + strand, within Pf6N2E2_1373at 1611.142 kb on + strand, within Pf6N2E2_1373at 1611.502 kb on + strand, within Pf6N2E2_1373at 1611.502 kb on + strand, within Pf6N2E2_1373at 1611.502 kb on + strand, within Pf6N2E2_1373at 1611.503 kb on - strand, within Pf6N2E2_1373at 1611.706 kb on + strandat 1611.707 kb on - strandat 1611.904 kb on + strandat 1611.904 kb on + strandat 1611.905 kb on - strandat 1611.905 kb on - strandat 1611.920 kb on - strandat 1611.920 kb on - strandat 1612.070 kb on + strandat 1612.071 kb on - strandat 1612.071 kb on - strandat 1612.202 kb on + strandat 1612.202 kb on + strandat 1612.205 kb on + strandat 1612.205 kb on + strandat 1612.205 kb on + strandat 1612.205 kb on + strandat 1612.206 kb on - strandat 1612.206 kb on - strandat 1612.206 kb on - strandat 1612.209 kb on + strandat 1612.210 kb on - strandat 1612.307 kb on + strandat 1612.308 kb on - strandat 1612.541 kb on + strand, within Pf6N2E2_1375at 1612.688 kb on + strand, within Pf6N2E2_1375at 1612.955 kb on + strandat 1612.956 kb on - strandat 1612.973 kb on + strandat 1612.973 kb on + strandat 1612.973 kb on + strandat 1612.973 kb on + strandat 1612.973 kb on + strandat 1612.973 kb on + strandat 1612.973 kb on + strandat 1612.973 kb on + strandat 1612.974 kb on - strandat 1612.974 kb on - strandat 1613.007 kb on - strandat 1613.019 kb on + strandat 1613.071 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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1,611,088 + Pf6N2E2_1373 0.33 -0.0
1,611,088 + Pf6N2E2_1373 0.33 +0.3
1,611,089 - Pf6N2E2_1373 0.33 -0.4
1,611,102 - Pf6N2E2_1373 0.35 +0.4
1,611,142 + Pf6N2E2_1373 0.39 -1.2
1,611,142 + Pf6N2E2_1373 0.39 +0.4
1,611,142 + Pf6N2E2_1373 0.39 -0.3
1,611,142 + Pf6N2E2_1373 0.39 +0.2
1,611,142 + Pf6N2E2_1373 0.39 -0.5
1,611,502 + Pf6N2E2_1373 0.79 -0.8
1,611,502 + Pf6N2E2_1373 0.79 +0.2
1,611,502 + Pf6N2E2_1373 0.79 +0.8
1,611,503 - Pf6N2E2_1373 0.79 -0.3
1,611,706 + -0.5
1,611,707 - +0.0
1,611,904 + +0.5
1,611,904 + -0.6
1,611,905 - +0.6
1,611,905 - -0.2
1,611,920 - -0.6
1,611,920 - +0.5
1,612,070 + -0.5
1,612,071 - -0.2
1,612,071 - +0.2
1,612,202 + +0.7
1,612,202 + +1.4
1,612,205 + -0.3
1,612,205 + +1.5
1,612,205 + +2.8
1,612,205 + +0.4
1,612,206 - +0.1
1,612,206 - +0.3
1,612,206 - +0.8
1,612,209 + +0.1
1,612,210 - +0.6
1,612,307 + +0.5
1,612,308 - -0.7
1,612,541 + Pf6N2E2_1375 0.40 +0.5
1,612,688 + Pf6N2E2_1375 0.59 -0.6
1,612,955 + +0.6
1,612,956 - -0.4
1,612,973 + +0.5
1,612,973 + +1.0
1,612,973 + -0.6
1,612,973 + +1.0
1,612,973 + +1.0
1,612,973 + -0.0
1,612,973 + -1.8
1,612,973 + -1.8
1,612,974 - -0.6
1,612,974 - -0.5
1,613,007 - -0.9
1,613,019 + +0.2
1,613,071 + +1.0

Or see this region's nucleotide sequence