Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1373 and Pf6N2E2_1374 are separated by 214 nucleotides Pf6N2E2_1374 and Pf6N2E2_1375 are separated by 157 nucleotides
Pf6N2E2_1373 - Transcriptional regulator of various polyols utilization, AraC family, at 1,610,790 to 1,611,692
_1373
Pf6N2E2_1374 - Various polyols ABC transporter, periplasmic substrate-binding protein, at 1,611,907 to 1,612,074
_1374
Pf6N2E2_1375 - Multiple polyol-specific dehydrogenase (EC 1.1.1.-), at 1,612,232 to 1,613,005
_1375
Position (kb)
1611
1612
1613 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1611.088 kb on + strand, within Pf6N2E2_1373 at 1611.088 kb on + strand, within Pf6N2E2_1373 at 1611.089 kb on - strand, within Pf6N2E2_1373 at 1611.102 kb on - strand, within Pf6N2E2_1373 at 1611.142 kb on + strand, within Pf6N2E2_1373 at 1611.142 kb on + strand, within Pf6N2E2_1373 at 1611.142 kb on + strand, within Pf6N2E2_1373 at 1611.142 kb on + strand, within Pf6N2E2_1373 at 1611.142 kb on + strand, within Pf6N2E2_1373 at 1611.502 kb on + strand, within Pf6N2E2_1373 at 1611.502 kb on + strand, within Pf6N2E2_1373 at 1611.502 kb on + strand, within Pf6N2E2_1373 at 1611.503 kb on - strand, within Pf6N2E2_1373 at 1611.706 kb on + strand at 1611.707 kb on - strand at 1611.904 kb on + strand at 1611.904 kb on + strand at 1611.905 kb on - strand at 1611.905 kb on - strand at 1611.920 kb on - strand at 1611.920 kb on - strand at 1612.070 kb on + strand at 1612.071 kb on - strand at 1612.071 kb on - strand at 1612.202 kb on + strand at 1612.202 kb on + strand at 1612.205 kb on + strand at 1612.205 kb on + strand at 1612.205 kb on + strand at 1612.205 kb on + strand at 1612.206 kb on - strand at 1612.206 kb on - strand at 1612.206 kb on - strand at 1612.209 kb on + strand at 1612.210 kb on - strand at 1612.307 kb on + strand at 1612.308 kb on - strand at 1612.541 kb on + strand, within Pf6N2E2_1375 at 1612.688 kb on + strand, within Pf6N2E2_1375 at 1612.955 kb on + strand at 1612.956 kb on - strand at 1612.973 kb on + strand at 1612.973 kb on + strand at 1612.973 kb on + strand at 1612.973 kb on + strand at 1612.973 kb on + strand at 1612.973 kb on + strand at 1612.973 kb on + strand at 1612.973 kb on + strand at 1612.974 kb on - strand at 1612.974 kb on - strand at 1613.007 kb on - strand at 1613.019 kb on + strand at 1613.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 1,611,088 + Pf6N2E2_1373 0.33 -0.0 1,611,088 + Pf6N2E2_1373 0.33 +0.3 1,611,089 - Pf6N2E2_1373 0.33 -0.4 1,611,102 - Pf6N2E2_1373 0.35 +0.4 1,611,142 + Pf6N2E2_1373 0.39 -1.2 1,611,142 + Pf6N2E2_1373 0.39 +0.4 1,611,142 + Pf6N2E2_1373 0.39 -0.3 1,611,142 + Pf6N2E2_1373 0.39 +0.2 1,611,142 + Pf6N2E2_1373 0.39 -0.5 1,611,502 + Pf6N2E2_1373 0.79 -0.8 1,611,502 + Pf6N2E2_1373 0.79 +0.2 1,611,502 + Pf6N2E2_1373 0.79 +0.8 1,611,503 - Pf6N2E2_1373 0.79 -0.3 1,611,706 + -0.5 1,611,707 - +0.0 1,611,904 + +0.5 1,611,904 + -0.6 1,611,905 - +0.6 1,611,905 - -0.2 1,611,920 - -0.6 1,611,920 - +0.5 1,612,070 + -0.5 1,612,071 - -0.2 1,612,071 - +0.2 1,612,202 + +0.7 1,612,202 + +1.4 1,612,205 + -0.3 1,612,205 + +1.5 1,612,205 + +2.8 1,612,205 + +0.4 1,612,206 - +0.1 1,612,206 - +0.3 1,612,206 - +0.8 1,612,209 + +0.1 1,612,210 - +0.6 1,612,307 + +0.5 1,612,308 - -0.7 1,612,541 + Pf6N2E2_1375 0.40 +0.5 1,612,688 + Pf6N2E2_1375 0.59 -0.6 1,612,955 + +0.6 1,612,956 - -0.4 1,612,973 + +0.5 1,612,973 + +1.0 1,612,973 + -0.6 1,612,973 + +1.0 1,612,973 + +1.0 1,612,973 + -0.0 1,612,973 + -1.8 1,612,973 + -1.8 1,612,974 - -0.6 1,612,974 - -0.5 1,613,007 - -0.9 1,613,019 + +0.2 1,613,071 + +1.0
Or see this region's nucleotide sequence