Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23070

Experiment: nitrogen source nitrate 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23065 and ABZR87_RS23070 are separated by 121 nucleotidesABZR87_RS23070 and ABZR87_RS23075 are separated by 29 nucleotides ABZR87_RS23065: ABZR87_RS23065 - porin, at 1,532,897 to 1,534,033 _RS23065 ABZR87_RS23070: ABZR87_RS23070 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 1,534,155 to 1,535,387 _RS23070 ABZR87_RS23075: ABZR87_RS23075 - tannase/feruloyl esterase family alpha/beta hydrolase, at 1,535,417 to 1,537,165 _RS23075 Position (kb) 1534 1535 1536Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1533.171 kb on + strand, within ABZR87_RS23065at 1533.171 kb on + strand, within ABZR87_RS23065at 1533.171 kb on + strand, within ABZR87_RS23065at 1533.258 kb on + strand, within ABZR87_RS23065at 1533.259 kb on - strand, within ABZR87_RS23065at 1533.370 kb on - strand, within ABZR87_RS23065at 1533.403 kb on - strand, within ABZR87_RS23065at 1533.510 kb on + strand, within ABZR87_RS23065at 1533.511 kb on - strand, within ABZR87_RS23065at 1533.511 kb on - strand, within ABZR87_RS23065at 1533.514 kb on + strand, within ABZR87_RS23065at 1533.514 kb on + strand, within ABZR87_RS23065at 1533.514 kb on + strand, within ABZR87_RS23065at 1533.514 kb on + strand, within ABZR87_RS23065at 1533.514 kb on + strand, within ABZR87_RS23065at 1533.515 kb on - strand, within ABZR87_RS23065at 1533.515 kb on - strand, within ABZR87_RS23065at 1533.515 kb on - strand, within ABZR87_RS23065at 1533.515 kb on - strand, within ABZR87_RS23065at 1533.549 kb on + strand, within ABZR87_RS23065at 1533.550 kb on - strand, within ABZR87_RS23065at 1533.585 kb on + strand, within ABZR87_RS23065at 1533.585 kb on + strand, within ABZR87_RS23065at 1533.585 kb on + strand, within ABZR87_RS23065at 1533.586 kb on - strand, within ABZR87_RS23065at 1533.586 kb on - strand, within ABZR87_RS23065at 1533.609 kb on + strand, within ABZR87_RS23065at 1533.610 kb on - strand, within ABZR87_RS23065at 1533.610 kb on - strand, within ABZR87_RS23065at 1533.663 kb on + strand, within ABZR87_RS23065at 1533.664 kb on - strand, within ABZR87_RS23065at 1533.664 kb on - strand, within ABZR87_RS23065at 1533.664 kb on - strand, within ABZR87_RS23065at 1533.664 kb on - strand, within ABZR87_RS23065at 1533.893 kb on - strand, within ABZR87_RS23065at 1533.909 kb on + strand, within ABZR87_RS23065at 1533.910 kb on - strand, within ABZR87_RS23065at 1533.910 kb on - strand, within ABZR87_RS23065at 1533.937 kb on - strandat 1534.047 kb on + strandat 1534.048 kb on - strandat 1534.099 kb on - strandat 1534.360 kb on + strand, within ABZR87_RS23070at 1534.360 kb on + strand, within ABZR87_RS23070at 1534.360 kb on + strand, within ABZR87_RS23070at 1534.360 kb on + strand, within ABZR87_RS23070at 1534.361 kb on - strand, within ABZR87_RS23070at 1534.379 kb on - strand, within ABZR87_RS23070at 1534.379 kb on - strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.492 kb on + strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.493 kb on - strand, within ABZR87_RS23070at 1534.657 kb on + strand, within ABZR87_RS23070at 1534.658 kb on - strand, within ABZR87_RS23070at 1534.658 kb on - strand, within ABZR87_RS23070at 1534.681 kb on + strand, within ABZR87_RS23070at 1534.682 kb on - strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.858 kb on + strand, within ABZR87_RS23070at 1534.859 kb on - strand, within ABZR87_RS23070at 1534.859 kb on - strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.942 kb on + strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1534.943 kb on - strand, within ABZR87_RS23070at 1535.466 kb on + strandat 1535.466 kb on + strandat 1535.749 kb on - strand, within ABZR87_RS23075at 1535.800 kb on - strand, within ABZR87_RS23075at 1535.886 kb on + strand, within ABZR87_RS23075at 1535.886 kb on + strand, within ABZR87_RS23075at 1535.887 kb on - strand, within ABZR87_RS23075at 1535.947 kb on - strand, within ABZR87_RS23075at 1535.947 kb on - strand, within ABZR87_RS23075at 1536.096 kb on + strand, within ABZR87_RS23075at 1536.097 kb on - strand, within ABZR87_RS23075at 1536.097 kb on - strand, within ABZR87_RS23075

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
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1,533,171 + ABZR87_RS23065 0.24 -0.4
1,533,171 + ABZR87_RS23065 0.24 -0.0
1,533,171 + ABZR87_RS23065 0.24 +0.1
1,533,258 + ABZR87_RS23065 0.32 +0.0
1,533,259 - ABZR87_RS23065 0.32 -0.5
1,533,370 - ABZR87_RS23065 0.42 -0.2
1,533,403 - ABZR87_RS23065 0.45 +0.5
1,533,510 + ABZR87_RS23065 0.54 +0.4
1,533,511 - ABZR87_RS23065 0.54 +0.7
1,533,511 - ABZR87_RS23065 0.54 +0.1
1,533,514 + ABZR87_RS23065 0.54 -1.6
1,533,514 + ABZR87_RS23065 0.54 -3.4
1,533,514 + ABZR87_RS23065 0.54 +0.0
1,533,514 + ABZR87_RS23065 0.54 +1.5
1,533,514 + ABZR87_RS23065 0.54 -0.4
1,533,515 - ABZR87_RS23065 0.54 -0.4
1,533,515 - ABZR87_RS23065 0.54 +1.3
1,533,515 - ABZR87_RS23065 0.54 -1.0
1,533,515 - ABZR87_RS23065 0.54 -0.7
1,533,549 + ABZR87_RS23065 0.57 +0.9
1,533,550 - ABZR87_RS23065 0.57 -0.7
1,533,585 + ABZR87_RS23065 0.61 -0.1
1,533,585 + ABZR87_RS23065 0.61 -0.5
1,533,585 + ABZR87_RS23065 0.61 +0.2
1,533,586 - ABZR87_RS23065 0.61 -0.5
1,533,586 - ABZR87_RS23065 0.61 -3.1
1,533,609 + ABZR87_RS23065 0.63 +1.6
1,533,610 - ABZR87_RS23065 0.63 +0.7
1,533,610 - ABZR87_RS23065 0.63 +0.9
1,533,663 + ABZR87_RS23065 0.67 +0.5
1,533,664 - ABZR87_RS23065 0.67 +1.5
1,533,664 - ABZR87_RS23065 0.67 -1.9
1,533,664 - ABZR87_RS23065 0.67 -1.2
1,533,664 - ABZR87_RS23065 0.67 +1.2
1,533,893 - ABZR87_RS23065 0.88 -0.2
1,533,909 + ABZR87_RS23065 0.89 +1.3
1,533,910 - ABZR87_RS23065 0.89 -0.6
1,533,910 - ABZR87_RS23065 0.89 +0.4
1,533,937 - +0.2
1,534,047 + -1.9
1,534,048 - +0.5
1,534,099 - -3.3
1,534,360 + ABZR87_RS23070 0.17 -0.4
1,534,360 + ABZR87_RS23070 0.17 +1.1
1,534,360 + ABZR87_RS23070 0.17 +0.5
1,534,360 + ABZR87_RS23070 0.17 -1.4
1,534,361 - ABZR87_RS23070 0.17 -0.3
1,534,379 - ABZR87_RS23070 0.18 +1.6
1,534,379 - ABZR87_RS23070 0.18 -0.1
1,534,492 + ABZR87_RS23070 0.27 -0.2
1,534,492 + ABZR87_RS23070 0.27 +0.9
1,534,492 + ABZR87_RS23070 0.27 -0.1
1,534,492 + ABZR87_RS23070 0.27 -1.6
1,534,492 + ABZR87_RS23070 0.27 -1.1
1,534,492 + ABZR87_RS23070 0.27 -0.5
1,534,492 + ABZR87_RS23070 0.27 -3.9
1,534,493 - ABZR87_RS23070 0.27 -1.2
1,534,493 - ABZR87_RS23070 0.27 -0.6
1,534,493 - ABZR87_RS23070 0.27 +0.1
1,534,493 - ABZR87_RS23070 0.27 -0.3
1,534,493 - ABZR87_RS23070 0.27 -1.1
1,534,493 - ABZR87_RS23070 0.27 -0.6
1,534,493 - ABZR87_RS23070 0.27 -0.7
1,534,493 - ABZR87_RS23070 0.27 +3.9
1,534,493 - ABZR87_RS23070 0.27 +0.1
1,534,493 - ABZR87_RS23070 0.27 -0.6
1,534,657 + ABZR87_RS23070 0.41 +0.5
1,534,658 - ABZR87_RS23070 0.41 -0.2
1,534,658 - ABZR87_RS23070 0.41 -0.1
1,534,681 + ABZR87_RS23070 0.43 -0.7
1,534,682 - ABZR87_RS23070 0.43 +0.7
1,534,858 + ABZR87_RS23070 0.57 +0.6
1,534,858 + ABZR87_RS23070 0.57 +0.2
1,534,858 + ABZR87_RS23070 0.57 -0.4
1,534,858 + ABZR87_RS23070 0.57 -2.0
1,534,858 + ABZR87_RS23070 0.57 +0.0
1,534,858 + ABZR87_RS23070 0.57 -2.3
1,534,859 - ABZR87_RS23070 0.57 +0.6
1,534,859 - ABZR87_RS23070 0.57 -1.4
1,534,942 + ABZR87_RS23070 0.64 -1.6
1,534,942 + ABZR87_RS23070 0.64 -0.4
1,534,942 + ABZR87_RS23070 0.64 -0.1
1,534,942 + ABZR87_RS23070 0.64 +0.9
1,534,942 + ABZR87_RS23070 0.64 -0.2
1,534,942 + ABZR87_RS23070 0.64 +0.1
1,534,943 - ABZR87_RS23070 0.64 -0.6
1,534,943 - ABZR87_RS23070 0.64 -0.2
1,534,943 - ABZR87_RS23070 0.64 -3.1
1,534,943 - ABZR87_RS23070 0.64 -0.3
1,534,943 - ABZR87_RS23070 0.64 +0.2
1,534,943 - ABZR87_RS23070 0.64 +1.5
1,535,466 + +1.9
1,535,466 + +1.3
1,535,749 - ABZR87_RS23075 0.19 +0.2
1,535,800 - ABZR87_RS23075 0.22 +0.2
1,535,886 + ABZR87_RS23075 0.27 +4.2
1,535,886 + ABZR87_RS23075 0.27 +0.2
1,535,887 - ABZR87_RS23075 0.27 +1.0
1,535,947 - ABZR87_RS23075 0.30 -0.7
1,535,947 - ABZR87_RS23075 0.30 -0.1
1,536,096 + ABZR87_RS23075 0.39 +0.9
1,536,097 - ABZR87_RS23075 0.39 -1.2
1,536,097 - ABZR87_RS23075 0.39 +1.2

Or see this region's nucleotide sequence