Experiment: nitrogen source nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21790 and ABZR87_RS21795 are separated by 48 nucleotides ABZR87_RS21795 and ABZR87_RS21800 are separated by 94 nucleotides ABZR87_RS21800 and ABZR87_RS21805 overlap by 4 nucleotides ABZR87_RS21805 and ABZR87_RS21810 are separated by 49 nucleotides
ABZR87_RS21790: ABZR87_RS21790 - DUF3005 domain-containing protein, at 1,274,031 to 1,274,486
_RS21790
ABZR87_RS21795: ABZR87_RS21795 - NUDIX domain-containing protein, at 1,274,535 to 1,275,269
_RS21795
ABZR87_RS21800: ABZR87_RS21800 - SPFH domain-containing protein, at 1,275,364 to 1,276,407
_RS21800
ABZR87_RS21805: ABZR87_RS21805 - sugar kinase, at 1,276,404 to 1,277,336
_RS21805
ABZR87_RS21810: ABZR87_RS21810 - enoyl-CoA hydratase, at 1,277,386 to 1,278,174
_RS21810
Position (kb) 1275
1276
1277 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1274.485 kb on - strand at 1274.630 kb on - strand, within ABZR87_RS21795 at 1274.732 kb on - strand, within ABZR87_RS21795 at 1274.794 kb on + strand, within ABZR87_RS21795 at 1274.795 kb on - strand, within ABZR87_RS21795 at 1274.795 kb on - strand, within ABZR87_RS21795 at 1274.795 kb on - strand, within ABZR87_RS21795 at 1274.795 kb on - strand, within ABZR87_RS21795 at 1274.959 kb on + strand, within ABZR87_RS21795 at 1274.959 kb on + strand, within ABZR87_RS21795 at 1274.959 kb on + strand, within ABZR87_RS21795 at 1274.960 kb on - strand, within ABZR87_RS21795 at 1274.960 kb on - strand, within ABZR87_RS21795 at 1275.203 kb on + strand at 1275.204 kb on - strand at 1275.303 kb on + strand at 1275.303 kb on + strand at 1275.431 kb on + strand at 1275.431 kb on + strand at 1275.431 kb on + strand at 1275.431 kb on + strand at 1275.432 kb on - strand at 1275.432 kb on - strand at 1275.463 kb on + strand at 1275.463 kb on + strand at 1275.580 kb on + strand, within ABZR87_RS21800 at 1275.649 kb on + strand, within ABZR87_RS21800 at 1275.650 kb on - strand, within ABZR87_RS21800 at 1275.934 kb on + strand, within ABZR87_RS21800 at 1275.935 kb on - strand, within ABZR87_RS21800 at 1275.935 kb on - strand, within ABZR87_RS21800 at 1275.935 kb on - strand, within ABZR87_RS21800 at 1276.186 kb on + strand, within ABZR87_RS21800 at 1276.187 kb on - strand, within ABZR87_RS21800 at 1276.429 kb on + strand at 1276.430 kb on - strand at 1276.500 kb on + strand, within ABZR87_RS21805 at 1276.501 kb on - strand, within ABZR87_RS21805 at 1276.534 kb on - strand, within ABZR87_RS21805 at 1276.626 kb on + strand, within ABZR87_RS21805 at 1276.659 kb on - strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.707 kb on + strand, within ABZR87_RS21805 at 1276.935 kb on + strand, within ABZR87_RS21805 at 1277.089 kb on - strand, within ABZR87_RS21805 at 1277.119 kb on + strand, within ABZR87_RS21805 at 1277.119 kb on + strand, within ABZR87_RS21805 at 1277.120 kb on - strand, within ABZR87_RS21805 at 1277.120 kb on - strand, within ABZR87_RS21805 at 1277.265 kb on + strand at 1277.265 kb on + strand at 1277.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM remove 1,274,485 - -1.0 1,274,630 - ABZR87_RS21795 0.13 -1.4 1,274,732 - ABZR87_RS21795 0.27 -0.7 1,274,794 + ABZR87_RS21795 0.35 +0.1 1,274,795 - ABZR87_RS21795 0.35 -0.4 1,274,795 - ABZR87_RS21795 0.35 +0.5 1,274,795 - ABZR87_RS21795 0.35 -0.1 1,274,795 - ABZR87_RS21795 0.35 -0.8 1,274,959 + ABZR87_RS21795 0.58 +0.8 1,274,959 + ABZR87_RS21795 0.58 -1.2 1,274,959 + ABZR87_RS21795 0.58 -3.2 1,274,960 - ABZR87_RS21795 0.58 -0.5 1,274,960 - ABZR87_RS21795 0.58 -1.6 1,275,203 + -0.9 1,275,204 - -1.6 1,275,303 + -0.3 1,275,303 + -2.7 1,275,431 + +1.5 1,275,431 + +0.9 1,275,431 + +0.3 1,275,431 + -0.0 1,275,432 - +0.6 1,275,432 - +1.0 1,275,463 + +1.0 1,275,463 + +1.1 1,275,580 + ABZR87_RS21800 0.21 -1.8 1,275,649 + ABZR87_RS21800 0.27 -1.4 1,275,650 - ABZR87_RS21800 0.27 +0.4 1,275,934 + ABZR87_RS21800 0.55 -0.9 1,275,935 - ABZR87_RS21800 0.55 -0.6 1,275,935 - ABZR87_RS21800 0.55 -1.4 1,275,935 - ABZR87_RS21800 0.55 +0.0 1,276,186 + ABZR87_RS21800 0.79 -0.9 1,276,187 - ABZR87_RS21800 0.79 -4.6 1,276,429 + +0.8 1,276,430 - +1.1 1,276,500 + ABZR87_RS21805 0.10 +0.2 1,276,501 - ABZR87_RS21805 0.10 -0.6 1,276,534 - ABZR87_RS21805 0.14 +1.6 1,276,626 + ABZR87_RS21805 0.24 +0.0 1,276,659 - ABZR87_RS21805 0.27 +1.1 1,276,707 + ABZR87_RS21805 0.32 +1.1 1,276,707 + ABZR87_RS21805 0.32 -0.4 1,276,707 + ABZR87_RS21805 0.32 -0.9 1,276,707 + ABZR87_RS21805 0.32 -0.4 1,276,707 + ABZR87_RS21805 0.32 -0.1 1,276,707 + ABZR87_RS21805 0.32 +1.0 1,276,935 + ABZR87_RS21805 0.57 +0.1 1,277,089 - ABZR87_RS21805 0.73 -1.2 1,277,119 + ABZR87_RS21805 0.77 +0.8 1,277,119 + ABZR87_RS21805 0.77 -2.9 1,277,120 - ABZR87_RS21805 0.77 +0.3 1,277,120 - ABZR87_RS21805 0.77 +0.7 1,277,265 + +0.8 1,277,265 + +0.8 1,277,266 - +1.3
Or see this region's nucleotide sequence