Experiment: nitrogen source nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20250 and ABZR87_RS20255 are separated by 15 nucleotides ABZR87_RS20255 and ABZR87_RS20260 overlap by 4 nucleotides ABZR87_RS20260 and ABZR87_RS20265 are separated by 70 nucleotides
ABZR87_RS20250: ABZR87_RS20250 - type VI secretion system lipoprotein TssJ, at 929,924 to 930,517
_RS20250
ABZR87_RS20255: ABZR87_RS20255 - type VI secretion system baseplate subunit TssK, at 930,533 to 931,879
_RS20255
ABZR87_RS20260: ABZR87_RS20260 - type IVB secretion system protein IcmH/DotU, at 931,876 to 932,661
_RS20260
ABZR87_RS20265: ABZR87_RS20265 - type VI secretion system Vgr family protein, at 932,732 to 935,452
_RS20265
Position (kb) 930
931
932 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 929.552 kb on + strand at 929.553 kb on - strand at 929.553 kb on - strand at 929.553 kb on - strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.579 kb on + strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.580 kb on - strand at 929.582 kb on + strand at 929.582 kb on + strand at 929.582 kb on + strand at 929.620 kb on + strand at 929.621 kb on - strand at 929.623 kb on + strand at 929.645 kb on + strand at 929.645 kb on + strand at 929.652 kb on + strand at 929.652 kb on + strand at 930.143 kb on + strand, within ABZR87_RS20250 at 930.183 kb on - strand, within ABZR87_RS20250 at 930.540 kb on - strand at 930.540 kb on - strand at 930.570 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.608 kb on + strand at 930.609 kb on - strand at 930.609 kb on - strand at 930.609 kb on - strand at 930.653 kb on + strand at 930.653 kb on + strand at 930.653 kb on + strand at 930.654 kb on - strand at 930.654 kb on - strand at 930.755 kb on + strand, within ABZR87_RS20255 at 930.755 kb on + strand, within ABZR87_RS20255 at 930.756 kb on - strand, within ABZR87_RS20255 at 930.756 kb on - strand, within ABZR87_RS20255 at 930.756 kb on - strand, within ABZR87_RS20255 at 930.849 kb on - strand, within ABZR87_RS20255 at 930.875 kb on + strand, within ABZR87_RS20255 at 930.944 kb on + strand, within ABZR87_RS20255 at 930.946 kb on + strand, within ABZR87_RS20255 at 930.946 kb on + strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.947 kb on - strand, within ABZR87_RS20255 at 930.974 kb on + strand, within ABZR87_RS20255 at 930.974 kb on + strand, within ABZR87_RS20255 at 930.974 kb on + strand, within ABZR87_RS20255 at 930.975 kb on - strand, within ABZR87_RS20255 at 930.975 kb on - strand, within ABZR87_RS20255 at 930.975 kb on - strand, within ABZR87_RS20255 at 931.133 kb on + strand, within ABZR87_RS20255 at 931.133 kb on + strand, within ABZR87_RS20255 at 931.134 kb on - strand, within ABZR87_RS20255 at 931.134 kb on - strand, within ABZR87_RS20255 at 931.188 kb on - strand, within ABZR87_RS20255 at 931.188 kb on - strand, within ABZR87_RS20255 at 931.264 kb on + strand, within ABZR87_RS20255 at 931.265 kb on - strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.301 kb on + strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.302 kb on - strand, within ABZR87_RS20255 at 931.385 kb on + strand, within ABZR87_RS20255 at 931.385 kb on + strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.386 kb on - strand, within ABZR87_RS20255 at 931.409 kb on + strand, within ABZR87_RS20255 at 931.410 kb on - strand, within ABZR87_RS20255 at 931.410 kb on - strand, within ABZR87_RS20255 at 931.475 kb on - strand, within ABZR87_RS20255 at 931.475 kb on - strand, within ABZR87_RS20255 at 931.493 kb on + strand, within ABZR87_RS20255 at 931.493 kb on + strand, within ABZR87_RS20255 at 931.494 kb on - strand, within ABZR87_RS20255 at 931.580 kb on + strand, within ABZR87_RS20255 at 931.580 kb on + strand, within ABZR87_RS20255 at 931.580 kb on + strand, within ABZR87_RS20255 at 931.580 kb on + strand, within ABZR87_RS20255 at 931.581 kb on - strand, within ABZR87_RS20255 at 931.581 kb on - strand, within ABZR87_RS20255 at 931.581 kb on - strand, within ABZR87_RS20255 at 931.581 kb on - strand, within ABZR87_RS20255 at 931.709 kb on + strand, within ABZR87_RS20255 at 931.709 kb on + strand, within ABZR87_RS20255 at 931.709 kb on + strand, within ABZR87_RS20255 at 931.709 kb on + strand, within ABZR87_RS20255 at 931.709 kb on + strand, within ABZR87_RS20255 at 931.710 kb on - strand, within ABZR87_RS20255 at 931.711 kb on + strand, within ABZR87_RS20255 at 931.711 kb on + strand, within ABZR87_RS20255 at 931.712 kb on - strand, within ABZR87_RS20255 at 931.757 kb on + strand at 931.758 kb on - strand at 931.758 kb on - strand at 931.758 kb on - strand at 931.758 kb on - strand at 931.787 kb on + strand at 931.787 kb on + strand at 931.787 kb on + strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.788 kb on - strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.823 kb on + strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.824 kb on - strand at 931.884 kb on + strand at 931.884 kb on + strand at 931.884 kb on + strand at 931.885 kb on - strand at 931.885 kb on - strand at 931.984 kb on + strand, within ABZR87_RS20260 at 931.984 kb on + strand, within ABZR87_RS20260 at 931.985 kb on - strand, within ABZR87_RS20260 at 931.985 kb on - strand, within ABZR87_RS20260 at 932.108 kb on + strand, within ABZR87_RS20260 at 932.137 kb on + strand, within ABZR87_RS20260 at 932.138 kb on - strand, within ABZR87_RS20260 at 932.138 kb on - strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.356 kb on + strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.357 kb on - strand, within ABZR87_RS20260 at 932.387 kb on - strand, within ABZR87_RS20260 at 932.602 kb on + strand at 932.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM remove 929,552 + +0.4 929,553 - -0.9 929,553 - +0.4 929,553 - -1.4 929,579 + -1.1 929,579 + -4.8 929,579 + +0.2 929,579 + -0.8 929,579 + -0.7 929,580 - +0.1 929,580 - +0.0 929,580 - -0.2 929,580 - +0.2 929,580 - +0.6 929,582 + +0.2 929,582 + -2.2 929,582 + +0.4 929,620 + -0.4 929,621 - +1.3 929,623 + +0.3 929,645 + +0.2 929,645 + -2.3 929,652 + -0.8 929,652 + -1.5 930,143 + ABZR87_RS20250 0.37 -0.1 930,183 - ABZR87_RS20250 0.44 -2.5 930,540 - -3.1 930,540 - +0.9 930,570 + +0.3 930,608 + -0.3 930,608 + +0.0 930,608 + +2.1 930,608 + +0.1 930,608 + -0.0 930,608 + +0.2 930,609 - -0.3 930,609 - +0.5 930,609 - +1.0 930,653 + +0.4 930,653 + -1.1 930,653 + +1.1 930,654 - -0.2 930,654 - +0.4 930,755 + ABZR87_RS20255 0.16 +0.5 930,755 + ABZR87_RS20255 0.16 -1.3 930,756 - ABZR87_RS20255 0.17 +0.8 930,756 - ABZR87_RS20255 0.17 -0.3 930,756 - ABZR87_RS20255 0.17 -0.2 930,849 - ABZR87_RS20255 0.23 -0.2 930,875 + ABZR87_RS20255 0.25 +0.4 930,944 + ABZR87_RS20255 0.31 -3.8 930,946 + ABZR87_RS20255 0.31 -0.7 930,946 + ABZR87_RS20255 0.31 -0.3 930,947 - ABZR87_RS20255 0.31 -0.9 930,947 - ABZR87_RS20255 0.31 +0.3 930,947 - ABZR87_RS20255 0.31 +0.8 930,947 - ABZR87_RS20255 0.31 -0.3 930,974 + ABZR87_RS20255 0.33 -0.1 930,974 + ABZR87_RS20255 0.33 +0.0 930,974 + ABZR87_RS20255 0.33 -0.8 930,975 - ABZR87_RS20255 0.33 +0.3 930,975 - ABZR87_RS20255 0.33 -2.6 930,975 - ABZR87_RS20255 0.33 -3.4 931,133 + ABZR87_RS20255 0.45 +1.3 931,133 + ABZR87_RS20255 0.45 -2.3 931,134 - ABZR87_RS20255 0.45 +0.2 931,134 - ABZR87_RS20255 0.45 +0.2 931,188 - ABZR87_RS20255 0.49 -0.3 931,188 - ABZR87_RS20255 0.49 -0.0 931,264 + ABZR87_RS20255 0.54 +1.6 931,265 - ABZR87_RS20255 0.54 -0.6 931,301 + ABZR87_RS20255 0.57 -0.3 931,301 + ABZR87_RS20255 0.57 -1.9 931,301 + ABZR87_RS20255 0.57 +3.6 931,301 + ABZR87_RS20255 0.57 +0.2 931,301 + ABZR87_RS20255 0.57 -0.5 931,301 + ABZR87_RS20255 0.57 -0.0 931,301 + ABZR87_RS20255 0.57 -0.7 931,302 - ABZR87_RS20255 0.57 -0.1 931,302 - ABZR87_RS20255 0.57 +0.1 931,302 - ABZR87_RS20255 0.57 -0.9 931,302 - ABZR87_RS20255 0.57 -0.5 931,385 + ABZR87_RS20255 0.63 +0.3 931,385 + ABZR87_RS20255 0.63 +0.2 931,386 - ABZR87_RS20255 0.63 +1.4 931,386 - ABZR87_RS20255 0.63 -2.1 931,386 - ABZR87_RS20255 0.63 -0.6 931,386 - ABZR87_RS20255 0.63 -0.0 931,386 - ABZR87_RS20255 0.63 -0.4 931,386 - ABZR87_RS20255 0.63 +0.7 931,409 + ABZR87_RS20255 0.65 -0.5 931,410 - ABZR87_RS20255 0.65 -2.4 931,410 - ABZR87_RS20255 0.65 +0.4 931,475 - ABZR87_RS20255 0.70 -1.9 931,475 - ABZR87_RS20255 0.70 -0.1 931,493 + ABZR87_RS20255 0.71 -0.3 931,493 + ABZR87_RS20255 0.71 +0.1 931,494 - ABZR87_RS20255 0.71 +0.6 931,580 + ABZR87_RS20255 0.78 -0.1 931,580 + ABZR87_RS20255 0.78 +0.7 931,580 + ABZR87_RS20255 0.78 -0.7 931,580 + ABZR87_RS20255 0.78 -0.3 931,581 - ABZR87_RS20255 0.78 +0.1 931,581 - ABZR87_RS20255 0.78 -0.3 931,581 - ABZR87_RS20255 0.78 -0.2 931,581 - ABZR87_RS20255 0.78 -1.6 931,709 + ABZR87_RS20255 0.87 +0.2 931,709 + ABZR87_RS20255 0.87 +1.4 931,709 + ABZR87_RS20255 0.87 -0.3 931,709 + ABZR87_RS20255 0.87 -0.1 931,709 + ABZR87_RS20255 0.87 -1.3 931,710 - ABZR87_RS20255 0.87 -0.3 931,711 + ABZR87_RS20255 0.87 -2.3 931,711 + ABZR87_RS20255 0.87 +0.0 931,712 - ABZR87_RS20255 0.88 -0.0 931,757 + -0.8 931,758 - -0.5 931,758 - -0.0 931,758 - +0.4 931,758 - +1.3 931,787 + -2.4 931,787 + +0.8 931,787 + +0.7 931,788 - -1.6 931,788 - +2.0 931,788 - -0.5 931,788 - -0.1 931,788 - +1.4 931,788 - +0.4 931,823 + +0.1 931,823 + -0.4 931,823 + -3.5 931,823 + +0.8 931,823 + +0.4 931,823 + -1.6 931,823 + -1.4 931,823 + -0.5 931,823 + +0.4 931,824 - -0.3 931,824 - -0.0 931,824 - -2.6 931,824 - +0.1 931,824 - -0.4 931,824 - -0.9 931,824 - -2.3 931,824 - -0.4 931,884 + +0.3 931,884 + -0.5 931,884 + -1.6 931,885 - +0.4 931,885 - -2.2 931,984 + ABZR87_RS20260 0.14 -1.0 931,984 + ABZR87_RS20260 0.14 +0.0 931,985 - ABZR87_RS20260 0.14 +0.4 931,985 - ABZR87_RS20260 0.14 +1.1 932,108 + ABZR87_RS20260 0.30 -0.7 932,137 + ABZR87_RS20260 0.33 +0.6 932,138 - ABZR87_RS20260 0.33 -0.5 932,138 - ABZR87_RS20260 0.33 +1.8 932,356 + ABZR87_RS20260 0.61 -0.8 932,356 + ABZR87_RS20260 0.61 +0.9 932,356 + ABZR87_RS20260 0.61 +0.5 932,356 + ABZR87_RS20260 0.61 -1.9 932,356 + ABZR87_RS20260 0.61 +0.3 932,356 + ABZR87_RS20260 0.61 -0.1 932,356 + ABZR87_RS20260 0.61 -3.2 932,356 + ABZR87_RS20260 0.61 -0.2 932,357 - ABZR87_RS20260 0.61 -1.2 932,357 - ABZR87_RS20260 0.61 -1.9 932,357 - ABZR87_RS20260 0.61 -0.4 932,357 - ABZR87_RS20260 0.61 +0.7 932,357 - ABZR87_RS20260 0.61 +0.1 932,357 - ABZR87_RS20260 0.61 -0.3 932,357 - ABZR87_RS20260 0.61 -0.2 932,387 - ABZR87_RS20260 0.65 -0.6 932,602 + +1.2 932,860 + +0.2
Or see this region's nucleotide sequence