Experiment: nitrogen source nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20035 and ABZR87_RS20040 are separated by 28 nucleotides ABZR87_RS20040 and ABZR87_RS20045 are separated by 30 nucleotides ABZR87_RS20045 and ABZR87_RS20050 are separated by 19 nucleotides ABZR87_RS20050 and ABZR87_RS20055 are separated by 51 nucleotides
ABZR87_RS20035: ABZR87_RS20035 - helix-turn-helix domain-containing protein, at 873,399 to 874,199
_RS20035
ABZR87_RS20040: ABZR87_RS20040 - BON domain-containing protein, at 874,228 to 874,875
_RS20040
ABZR87_RS20045: ABZR87_RS20045 - TraR/DksA family transcriptional regulator, at 874,906 to 875,268
_RS20045
ABZR87_RS20050: ABZR87_RS20050 - flavodoxin family protein, at 875,288 to 875,818
_RS20050
ABZR87_RS20055: ABZR87_RS20055 - BON domain-containing protein, at 875,870 to 876,523
_RS20055
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.026 kb on + strand, within ABZR87_RS20035 at 874.026 kb on + strand, within ABZR87_RS20035 at 874.027 kb on - strand, within ABZR87_RS20035 at 874.077 kb on + strand, within ABZR87_RS20035 at 874.078 kb on - strand, within ABZR87_RS20035 at 874.078 kb on - strand, within ABZR87_RS20035 at 874.332 kb on + strand, within ABZR87_RS20040 at 874.333 kb on - strand, within ABZR87_RS20040 at 874.333 kb on - strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.746 kb on - strand, within ABZR87_RS20040 at 874.746 kb on - strand, within ABZR87_RS20040 at 874.876 kb on - strand at 874.894 kb on - strand at 874.894 kb on - strand at 874.894 kb on - strand at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.355 kb on - strand, within ABZR87_RS20050 at 875.365 kb on + strand, within ABZR87_RS20050 at 875.366 kb on - strand, within ABZR87_RS20050 at 875.558 kb on - strand, within ABZR87_RS20050 at 875.558 kb on - strand, within ABZR87_RS20050 at 875.594 kb on + strand, within ABZR87_RS20050 at 875.634 kb on + strand, within ABZR87_RS20050 at 875.635 kb on - strand, within ABZR87_RS20050 at 875.635 kb on - strand, within ABZR87_RS20050 at 875.635 kb on - strand, within ABZR87_RS20050 at 875.635 kb on - strand, within ABZR87_RS20050 at 875.639 kb on - strand, within ABZR87_RS20050 at 875.660 kb on + strand, within ABZR87_RS20050 at 875.660 kb on + strand, within ABZR87_RS20050 at 875.793 kb on + strand at 875.793 kb on + strand at 875.796 kb on + strand at 875.796 kb on + strand at 875.796 kb on + strand at 875.796 kb on + strand at 875.796 kb on + strand at 875.797 kb on - strand at 875.797 kb on - strand at 875.823 kb on + strand at 875.824 kb on - strand at 875.824 kb on - strand at 875.871 kb on + strand at 875.872 kb on - strand at 875.872 kb on - strand at 875.872 kb on - strand at 875.973 kb on + strand, within ABZR87_RS20055 at 875.973 kb on + strand, within ABZR87_RS20055 at 875.974 kb on - strand, within ABZR87_RS20055 at 876.242 kb on + strand, within ABZR87_RS20055 at 876.243 kb on - strand, within ABZR87_RS20055 at 876.243 kb on - strand, within ABZR87_RS20055 at 876.243 kb on - strand, within ABZR87_RS20055 at 876.243 kb on - strand, within ABZR87_RS20055 at 876.243 kb on - strand, within ABZR87_RS20055
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM remove 874,026 + ABZR87_RS20035 0.78 +0.0 874,026 + ABZR87_RS20035 0.78 -0.3 874,027 - ABZR87_RS20035 0.78 +1.0 874,077 + ABZR87_RS20035 0.85 -3.1 874,078 - ABZR87_RS20035 0.85 +0.2 874,078 - ABZR87_RS20035 0.85 -1.1 874,332 + ABZR87_RS20040 0.16 -0.2 874,333 - ABZR87_RS20040 0.16 -1.2 874,333 - ABZR87_RS20040 0.16 +0.6 874,745 + ABZR87_RS20040 0.80 +1.6 874,745 + ABZR87_RS20040 0.80 -0.5 874,745 + ABZR87_RS20040 0.80 -2.0 874,745 + ABZR87_RS20040 0.80 -0.0 874,745 + ABZR87_RS20040 0.80 -0.2 874,746 - ABZR87_RS20040 0.80 +0.1 874,746 - ABZR87_RS20040 0.80 -0.6 874,876 - -0.8 874,894 - -0.6 874,894 - -0.8 874,894 - -1.0 875,018 + ABZR87_RS20045 0.31 -1.2 875,018 + ABZR87_RS20045 0.31 -0.1 875,018 + ABZR87_RS20045 0.31 -0.1 875,018 + ABZR87_RS20045 0.31 +1.4 875,018 + ABZR87_RS20045 0.31 -1.2 875,019 - ABZR87_RS20045 0.31 +1.7 875,019 - ABZR87_RS20045 0.31 +1.6 875,019 - ABZR87_RS20045 0.31 -0.6 875,034 + ABZR87_RS20045 0.35 -0.2 875,034 + ABZR87_RS20045 0.35 +0.1 875,034 + ABZR87_RS20045 0.35 -1.3 875,035 - ABZR87_RS20045 0.36 +1.4 875,035 - ABZR87_RS20045 0.36 -0.8 875,035 - ABZR87_RS20045 0.36 -0.9 875,035 - ABZR87_RS20045 0.36 -0.3 875,355 - ABZR87_RS20050 0.13 -0.5 875,365 + ABZR87_RS20050 0.15 +0.2 875,366 - ABZR87_RS20050 0.15 +1.8 875,558 - ABZR87_RS20050 0.51 +0.3 875,558 - ABZR87_RS20050 0.51 +0.6 875,594 + ABZR87_RS20050 0.58 +0.0 875,634 + ABZR87_RS20050 0.65 -1.0 875,635 - ABZR87_RS20050 0.65 -0.8 875,635 - ABZR87_RS20050 0.65 -3.2 875,635 - ABZR87_RS20050 0.65 -0.4 875,635 - ABZR87_RS20050 0.65 +1.8 875,639 - ABZR87_RS20050 0.66 -1.1 875,660 + ABZR87_RS20050 0.70 +0.9 875,660 + ABZR87_RS20050 0.70 +0.8 875,793 + +1.3 875,793 + -0.6 875,796 + +1.2 875,796 + +0.1 875,796 + -0.4 875,796 + -0.2 875,796 + +1.4 875,797 - -0.6 875,797 - -1.6 875,823 + +0.3 875,824 - +0.2 875,824 - +0.5 875,871 + +1.6 875,872 - -1.1 875,872 - +0.9 875,872 - -1.1 875,973 + ABZR87_RS20055 0.16 +0.8 875,973 + ABZR87_RS20055 0.16 -0.3 875,974 - ABZR87_RS20055 0.16 +0.4 876,242 + ABZR87_RS20055 0.57 -0.1 876,243 - ABZR87_RS20055 0.57 -0.9 876,243 - ABZR87_RS20055 0.57 -0.8 876,243 - ABZR87_RS20055 0.57 -0.7 876,243 - ABZR87_RS20055 0.57 -0.5 876,243 - ABZR87_RS20055 0.57 -0.9
Or see this region's nucleotide sequence