Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18285

Experiment: nitrogen source nitrate 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18275 and ABZR87_RS18280 are separated by 51 nucleotidesABZR87_RS18280 and ABZR87_RS18285 are separated by 134 nucleotidesABZR87_RS18285 and ABZR87_RS18290 are separated by 40 nucleotidesABZR87_RS18290 and ABZR87_RS18295 are separated by 72 nucleotides ABZR87_RS18275: ABZR87_RS18275 - MBL fold metallo-hydrolase, at 470,325 to 471,149 _RS18275 ABZR87_RS18280: ABZR87_RS18280 - cysteine hydrolase family protein, at 471,201 to 471,860 _RS18280 ABZR87_RS18285: ABZR87_RS18285 - helix-turn-helix domain-containing protein, at 471,995 to 472,981 _RS18285 ABZR87_RS18290: ABZR87_RS18290 - glycine zipper 2TM domain-containing protein, at 473,022 to 473,204 _RS18290 ABZR87_RS18295: ABZR87_RS18295 - YggT family protein, at 473,277 to 473,837 _RS18295 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 470.999 kb on + strand, within ABZR87_RS18275at 471.000 kb on - strand, within ABZR87_RS18275at 471.000 kb on - strand, within ABZR87_RS18275at 471.040 kb on - strand, within ABZR87_RS18275at 471.042 kb on + strand, within ABZR87_RS18275at 471.042 kb on + strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.147 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.263 kb on - strandat 471.263 kb on - strandat 471.263 kb on - strandat 471.263 kb on - strandat 471.409 kb on + strand, within ABZR87_RS18280at 471.410 kb on - strand, within ABZR87_RS18280at 471.410 kb on - strand, within ABZR87_RS18280at 471.505 kb on + strand, within ABZR87_RS18280at 471.524 kb on + strand, within ABZR87_RS18280at 471.598 kb on + strand, within ABZR87_RS18280at 471.598 kb on + strand, within ABZR87_RS18280at 471.598 kb on + strand, within ABZR87_RS18280at 471.599 kb on - strand, within ABZR87_RS18280at 471.599 kb on - strand, within ABZR87_RS18280at 471.599 kb on - strand, within ABZR87_RS18280at 471.775 kb on + strand, within ABZR87_RS18280at 471.855 kb on - strandat 471.930 kb on + strandat 471.930 kb on + strandat 471.931 kb on - strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 472.038 kb on + strandat 472.038 kb on + strandat 472.038 kb on + strandat 472.039 kb on - strandat 472.039 kb on - strandat 472.046 kb on - strandat 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.259 kb on - strand, within ABZR87_RS18285at 472.259 kb on - strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.308 kb on - strand, within ABZR87_RS18285at 472.440 kb on + strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.463 kb on + strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.829 kb on + strand, within ABZR87_RS18285at 472.934 kb on + strandat 472.934 kb on + strandat 472.934 kb on + strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.935 kb on - strandat 472.955 kb on + strandat 473.023 kb on + strandat 473.023 kb on + strandat 473.024 kb on - strandat 473.024 kb on - strandat 473.024 kb on - strandat 473.070 kb on + strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.071 kb on - strand, within ABZR87_RS18290at 473.178 kb on + strand, within ABZR87_RS18290at 473.179 kb on - strand, within ABZR87_RS18290at 473.179 kb on - strand, within ABZR87_RS18290at 473.245 kb on + strandat 473.246 kb on - strandat 473.246 kb on - strandat 473.605 kb on + strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.606 kb on - strand, within ABZR87_RS18295at 473.623 kb on + strand, within ABZR87_RS18295at 473.624 kb on - strand, within ABZR87_RS18295at 473.652 kb on - strand, within ABZR87_RS18295at 473.653 kb on + strand, within ABZR87_RS18295at 473.653 kb on + strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.654 kb on - strand, within ABZR87_RS18295at 473.826 kb on - strandat 473.971 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
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470,999 + ABZR87_RS18275 0.82 -0.3
471,000 - ABZR87_RS18275 0.82 +0.3
471,000 - ABZR87_RS18275 0.82 -0.4
471,040 - ABZR87_RS18275 0.87 -0.7
471,042 + ABZR87_RS18275 0.87 +0.3
471,042 + ABZR87_RS18275 0.87 -1.1
471,043 - ABZR87_RS18275 0.87 -0.6
471,043 - ABZR87_RS18275 0.87 +0.5
471,043 - ABZR87_RS18275 0.87 -0.9
471,043 - ABZR87_RS18275 0.87 +1.3
471,043 - ABZR87_RS18275 0.87 -0.6
471,147 + +0.7
471,262 + +0.4
471,262 + +0.4
471,262 + +0.3
471,262 + +2.0
471,262 + +0.3
471,263 - -0.9
471,263 - +0.6
471,263 - -0.2
471,263 - +1.4
471,409 + ABZR87_RS18280 0.32 +0.2
471,410 - ABZR87_RS18280 0.32 +1.0
471,410 - ABZR87_RS18280 0.32 +1.9
471,505 + ABZR87_RS18280 0.46 +0.6
471,524 + ABZR87_RS18280 0.49 -0.1
471,598 + ABZR87_RS18280 0.60 -1.9
471,598 + ABZR87_RS18280 0.60 -1.4
471,598 + ABZR87_RS18280 0.60 +0.4
471,599 - ABZR87_RS18280 0.60 +0.5
471,599 - ABZR87_RS18280 0.60 -1.0
471,599 - ABZR87_RS18280 0.60 -0.8
471,775 + ABZR87_RS18280 0.87 +0.6
471,855 - -0.6
471,930 + +0.4
471,930 + -1.3
471,931 - +0.6
471,994 + +0.9
471,994 + -0.0
471,994 + -0.5
471,994 + +0.4
471,994 + +0.6
471,994 + -1.1
471,994 + +0.5
471,994 + +0.3
471,994 + +0.1
471,994 + -0.2
471,995 - -1.2
471,995 - +0.2
471,995 - -1.9
471,995 - -3.7
471,995 - +1.2
471,995 - +0.7
472,038 + -0.2
472,038 + +0.3
472,038 + +0.2
472,039 - +0.1
472,039 - +0.1
472,046 - +0.4
472,121 + ABZR87_RS18285 0.13 -0.5
472,121 + ABZR87_RS18285 0.13 +0.2
472,121 + ABZR87_RS18285 0.13 +0.6
472,121 + ABZR87_RS18285 0.13 +0.7
472,122 - ABZR87_RS18285 0.13 +0.3
472,122 - ABZR87_RS18285 0.13 +0.8
472,122 - ABZR87_RS18285 0.13 -0.3
472,259 - ABZR87_RS18285 0.27 +4.2
472,259 - ABZR87_RS18285 0.27 +0.1
472,307 + ABZR87_RS18285 0.32 +0.4
472,307 + ABZR87_RS18285 0.32 -0.4
472,307 + ABZR87_RS18285 0.32 -0.4
472,307 + ABZR87_RS18285 0.32 +0.7
472,308 - ABZR87_RS18285 0.32 +0.1
472,440 + ABZR87_RS18285 0.45 +0.6
472,441 - ABZR87_RS18285 0.45 +0.7
472,441 - ABZR87_RS18285 0.45 +2.4
472,463 + ABZR87_RS18285 0.47 +1.9
472,464 - ABZR87_RS18285 0.48 -0.3
472,464 - ABZR87_RS18285 0.48 +0.1
472,464 - ABZR87_RS18285 0.48 +1.7
472,625 + ABZR87_RS18285 0.64 +0.2
472,625 + ABZR87_RS18285 0.64 +0.3
472,625 + ABZR87_RS18285 0.64 -0.1
472,626 - ABZR87_RS18285 0.64 -3.0
472,626 - ABZR87_RS18285 0.64 +0.8
472,626 - ABZR87_RS18285 0.64 +0.3
472,829 + ABZR87_RS18285 0.84 -0.4
472,934 + +0.9
472,934 + -1.8
472,934 + -1.2
472,935 - +0.0
472,935 - +0.9
472,935 - -1.1
472,935 - -0.3
472,955 + +0.5
473,023 + +1.2
473,023 + +0.2
473,024 - +0.1
473,024 - +1.4
473,024 - +0.4
473,070 + ABZR87_RS18290 0.26 -0.2
473,071 - ABZR87_RS18290 0.27 -0.8
473,071 - ABZR87_RS18290 0.27 -1.6
473,071 - ABZR87_RS18290 0.27 +0.5
473,178 + ABZR87_RS18290 0.85 +0.2
473,179 - ABZR87_RS18290 0.86 -0.2
473,179 - ABZR87_RS18290 0.86 -0.3
473,245 + +0.3
473,246 - -0.3
473,246 - -0.6
473,605 + ABZR87_RS18295 0.58 -2.6
473,606 - ABZR87_RS18295 0.59 +1.6
473,606 - ABZR87_RS18295 0.59 +1.0
473,606 - ABZR87_RS18295 0.59 -2.4
473,623 + ABZR87_RS18295 0.62 -2.1
473,624 - ABZR87_RS18295 0.62 +1.1
473,652 - ABZR87_RS18295 0.67 +0.4
473,653 + ABZR87_RS18295 0.67 -0.6
473,653 + ABZR87_RS18295 0.67 +0.9
473,654 - ABZR87_RS18295 0.67 +0.4
473,654 - ABZR87_RS18295 0.67 -3.0
473,654 - ABZR87_RS18295 0.67 -0.5
473,654 - ABZR87_RS18295 0.67 -0.1
473,654 - ABZR87_RS18295 0.67 +0.2
473,826 - +0.6
473,971 + -2.7

Or see this region's nucleotide sequence