Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03690

Experiment: nitrogen source nitrate 20mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03685 and ABZR87_RS03690 are separated by 182 nucleotidesABZR87_RS03690 and ABZR87_RS03695 are separated by 159 nucleotidesABZR87_RS03695 and ABZR87_RS03700 are separated by 19 nucleotides ABZR87_RS03685: ABZR87_RS03685 - PASTA domain-containing protein, at 768,113 to 769,072 _RS03685 ABZR87_RS03690: ABZR87_RS03690 - DUF305 domain-containing protein, at 769,255 to 769,770 _RS03690 ABZR87_RS03695: ABZR87_RS03695 - carboxymuconolactone decarboxylase family protein, at 769,930 to 770,262 _RS03695 ABZR87_RS03700: ABZR87_RS03700 - RNA polymerase sigma factor, at 770,282 to 770,839 _RS03700 Position (kb) 769 770Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 768.499 kb on - strand, within ABZR87_RS03685at 768.499 kb on - strand, within ABZR87_RS03685at 768.585 kb on + strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.586 kb on - strand, within ABZR87_RS03685at 768.624 kb on - strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.818 kb on + strand, within ABZR87_RS03685at 768.819 kb on - strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685at 768.876 kb on + strand, within ABZR87_RS03685at 768.968 kb on + strand, within ABZR87_RS03685at 768.968 kb on + strand, within ABZR87_RS03685at 768.968 kb on + strand, within ABZR87_RS03685at 768.969 kb on - strand, within ABZR87_RS03685at 768.969 kb on - strand, within ABZR87_RS03685at 768.984 kb on - strandat 768.984 kb on - strandat 768.984 kb on - strandat 769.053 kb on - strandat 769.109 kb on + strandat 769.110 kb on - strandat 769.127 kb on + strandat 769.127 kb on + strandat 769.128 kb on - strandat 769.128 kb on - strandat 769.128 kb on - strandat 769.200 kb on + strandat 769.201 kb on - strandat 769.292 kb on + strandat 769.292 kb on + strandat 769.293 kb on - strandat 769.411 kb on + strand, within ABZR87_RS03690at 769.411 kb on + strand, within ABZR87_RS03690at 769.412 kb on - strand, within ABZR87_RS03690at 769.425 kb on + strand, within ABZR87_RS03690at 769.425 kb on + strand, within ABZR87_RS03690at 769.425 kb on + strand, within ABZR87_RS03690at 769.425 kb on + strand, within ABZR87_RS03690at 769.426 kb on - strand, within ABZR87_RS03690at 769.426 kb on - strand, within ABZR87_RS03690at 769.487 kb on + strand, within ABZR87_RS03690at 769.487 kb on + strand, within ABZR87_RS03690at 769.487 kb on + strand, within ABZR87_RS03690at 769.487 kb on + strand, within ABZR87_RS03690at 769.487 kb on + strand, within ABZR87_RS03690at 769.487 kb on + strand, within ABZR87_RS03690at 769.487 kb on + strand, within ABZR87_RS03690at 769.488 kb on - strand, within ABZR87_RS03690at 769.488 kb on - strand, within ABZR87_RS03690at 769.488 kb on - strand, within ABZR87_RS03690at 769.592 kb on + strand, within ABZR87_RS03690at 769.592 kb on + strand, within ABZR87_RS03690at 769.592 kb on + strand, within ABZR87_RS03690at 769.593 kb on - strand, within ABZR87_RS03690at 769.593 kb on - strand, within ABZR87_RS03690at 769.593 kb on - strand, within ABZR87_RS03690at 769.593 kb on - strand, within ABZR87_RS03690at 769.593 kb on - strand, within ABZR87_RS03690at 769.593 kb on - strand, within ABZR87_RS03690at 769.593 kb on - strand, within ABZR87_RS03690at 769.675 kb on + strand, within ABZR87_RS03690at 769.675 kb on + strand, within ABZR87_RS03690at 769.676 kb on - strand, within ABZR87_RS03690at 769.695 kb on - strand, within ABZR87_RS03690at 769.695 kb on - strand, within ABZR87_RS03690at 769.706 kb on + strand, within ABZR87_RS03690at 769.706 kb on + strand, within ABZR87_RS03690at 769.707 kb on - strand, within ABZR87_RS03690at 769.707 kb on - strand, within ABZR87_RS03690at 769.707 kb on - strand, within ABZR87_RS03690at 769.763 kb on + strandat 769.763 kb on + strandat 769.764 kb on - strandat 769.764 kb on - strandat 769.764 kb on - strandat 769.764 kb on - strandat 769.764 kb on - strandat 769.764 kb on - strandat 769.852 kb on + strandat 769.853 kb on - strandat 769.853 kb on - strandat 769.853 kb on - strandat 769.853 kb on - strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.931 kb on + strandat 769.932 kb on - strandat 769.932 kb on - strandat 769.932 kb on - strandat 769.932 kb on - strandat 769.932 kb on - strandat 769.932 kb on - strandat 769.932 kb on - strandat 769.932 kb on - strandat 770.034 kb on + strand, within ABZR87_RS03695at 770.062 kb on - strand, within ABZR87_RS03695at 770.062 kb on - strand, within ABZR87_RS03695at 770.062 kb on - strand, within ABZR87_RS03695at 770.078 kb on + strand, within ABZR87_RS03695at 770.078 kb on + strand, within ABZR87_RS03695at 770.078 kb on + strand, within ABZR87_RS03695at 770.078 kb on + strand, within ABZR87_RS03695at 770.078 kb on + strand, within ABZR87_RS03695at 770.079 kb on - strand, within ABZR87_RS03695at 770.091 kb on + strand, within ABZR87_RS03695at 770.092 kb on - strand, within ABZR87_RS03695at 770.092 kb on - strand, within ABZR87_RS03695at 770.092 kb on - strand, within ABZR87_RS03695at 770.178 kb on + strand, within ABZR87_RS03695at 770.249 kb on + strandat 770.249 kb on + strandat 770.250 kb on - strandat 770.250 kb on - strandat 770.284 kb on - strandat 770.320 kb on - strandat 770.399 kb on + strand, within ABZR87_RS03700at 770.399 kb on + strand, within ABZR87_RS03700at 770.399 kb on + strand, within ABZR87_RS03700at 770.399 kb on + strand, within ABZR87_RS03700at 770.400 kb on - strand, within ABZR87_RS03700at 770.400 kb on - strand, within ABZR87_RS03700at 770.400 kb on - strand, within ABZR87_RS03700at 770.464 kb on - strand, within ABZR87_RS03700at 770.464 kb on - strand, within ABZR87_RS03700at 770.464 kb on - strand, within ABZR87_RS03700at 770.464 kb on - strand, within ABZR87_RS03700at 770.464 kb on - strand, within ABZR87_RS03700at 770.464 kb on - strand, within ABZR87_RS03700at 770.464 kb on - strand, within ABZR87_RS03700at 770.556 kb on + strand, within ABZR87_RS03700at 770.556 kb on + strand, within ABZR87_RS03700at 770.556 kb on + strand, within ABZR87_RS03700at 770.557 kb on - strand, within ABZR87_RS03700at 770.584 kb on + strand, within ABZR87_RS03700at 770.585 kb on - strand, within ABZR87_RS03700at 770.621 kb on + strand, within ABZR87_RS03700at 770.622 kb on - strand, within ABZR87_RS03700at 770.622 kb on - strand, within ABZR87_RS03700at 770.652 kb on - strand, within ABZR87_RS03700at 770.671 kb on - strand, within ABZR87_RS03700at 770.747 kb on + strand, within ABZR87_RS03700at 770.747 kb on + strand, within ABZR87_RS03700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
remove
768,499 - ABZR87_RS03685 0.40 -0.2
768,499 - ABZR87_RS03685 0.40 -0.6
768,585 + ABZR87_RS03685 0.49 -0.3
768,586 - ABZR87_RS03685 0.49 +0.8
768,586 - ABZR87_RS03685 0.49 +0.4
768,586 - ABZR87_RS03685 0.49 +1.2
768,586 - ABZR87_RS03685 0.49 +0.1
768,586 - ABZR87_RS03685 0.49 -0.4
768,624 - ABZR87_RS03685 0.53 +1.2
768,818 + ABZR87_RS03685 0.73 -0.3
768,818 + ABZR87_RS03685 0.73 -0.5
768,818 + ABZR87_RS03685 0.73 -2.7
768,818 + ABZR87_RS03685 0.73 -0.8
768,818 + ABZR87_RS03685 0.73 +0.7
768,818 + ABZR87_RS03685 0.73 +0.2
768,819 - ABZR87_RS03685 0.74 -1.4
768,876 + ABZR87_RS03685 0.79 -0.2
768,876 + ABZR87_RS03685 0.79 -1.0
768,876 + ABZR87_RS03685 0.79 -1.0
768,876 + ABZR87_RS03685 0.79 +0.2
768,968 + ABZR87_RS03685 0.89 +3.0
768,968 + ABZR87_RS03685 0.89 -0.3
768,968 + ABZR87_RS03685 0.89 +0.2
768,969 - ABZR87_RS03685 0.89 +1.0
768,969 - ABZR87_RS03685 0.89 +0.6
768,984 - -3.7
768,984 - -1.2
768,984 - +1.5
769,053 - -0.1
769,109 + +1.0
769,110 - +0.5
769,127 + +0.3
769,127 + -1.6
769,128 - -1.4
769,128 - +0.2
769,128 - +0.2
769,200 + -0.5
769,201 - -1.5
769,292 + +2.2
769,292 + +0.1
769,293 - -0.7
769,411 + ABZR87_RS03690 0.30 +0.6
769,411 + ABZR87_RS03690 0.30 -0.7
769,412 - ABZR87_RS03690 0.30 -0.4
769,425 + ABZR87_RS03690 0.33 +0.8
769,425 + ABZR87_RS03690 0.33 +0.7
769,425 + ABZR87_RS03690 0.33 +1.2
769,425 + ABZR87_RS03690 0.33 +0.2
769,426 - ABZR87_RS03690 0.33 +0.2
769,426 - ABZR87_RS03690 0.33 -0.1
769,487 + ABZR87_RS03690 0.45 +0.1
769,487 + ABZR87_RS03690 0.45 -0.9
769,487 + ABZR87_RS03690 0.45 -1.0
769,487 + ABZR87_RS03690 0.45 -0.6
769,487 + ABZR87_RS03690 0.45 -0.6
769,487 + ABZR87_RS03690 0.45 -3.2
769,487 + ABZR87_RS03690 0.45 +0.3
769,488 - ABZR87_RS03690 0.45 +2.9
769,488 - ABZR87_RS03690 0.45 -3.2
769,488 - ABZR87_RS03690 0.45 +1.7
769,592 + ABZR87_RS03690 0.65 -0.6
769,592 + ABZR87_RS03690 0.65 +1.6
769,592 + ABZR87_RS03690 0.65 -1.9
769,593 - ABZR87_RS03690 0.66 -0.1
769,593 - ABZR87_RS03690 0.66 +0.2
769,593 - ABZR87_RS03690 0.66 -0.2
769,593 - ABZR87_RS03690 0.66 +0.5
769,593 - ABZR87_RS03690 0.66 +1.1
769,593 - ABZR87_RS03690 0.66 +1.2
769,593 - ABZR87_RS03690 0.66 +2.0
769,675 + ABZR87_RS03690 0.81 +0.2
769,675 + ABZR87_RS03690 0.81 -1.3
769,676 - ABZR87_RS03690 0.82 +0.7
769,695 - ABZR87_RS03690 0.85 +0.4
769,695 - ABZR87_RS03690 0.85 +0.9
769,706 + ABZR87_RS03690 0.87 -0.3
769,706 + ABZR87_RS03690 0.87 +1.7
769,707 - ABZR87_RS03690 0.88 +1.0
769,707 - ABZR87_RS03690 0.88 -2.3
769,707 - ABZR87_RS03690 0.88 -0.7
769,763 + -1.0
769,763 + +1.7
769,764 - -0.9
769,764 - -0.0
769,764 - +0.0
769,764 - -1.7
769,764 - +0.0
769,764 - +1.4
769,852 + -0.5
769,853 - -0.1
769,853 - -0.3
769,853 - +0.2
769,853 - +0.8
769,931 + -1.9
769,931 + +0.6
769,931 + -1.2
769,931 + -0.8
769,931 + +0.6
769,931 + -3.8
769,931 + -2.2
769,931 + -1.1
769,931 + -2.7
769,931 + +1.2
769,931 + -1.6
769,931 + -0.5
769,931 + -0.3
769,932 - -0.1
769,932 - -1.2
769,932 - +0.5
769,932 - +0.4
769,932 - +0.6
769,932 - -2.2
769,932 - +0.1
769,932 - +0.8
770,034 + ABZR87_RS03695 0.31 -0.6
770,062 - ABZR87_RS03695 0.40 +0.6
770,062 - ABZR87_RS03695 0.40 +0.6
770,062 - ABZR87_RS03695 0.40 -0.5
770,078 + ABZR87_RS03695 0.44 -1.9
770,078 + ABZR87_RS03695 0.44 -1.1
770,078 + ABZR87_RS03695 0.44 -2.1
770,078 + ABZR87_RS03695 0.44 +0.4
770,078 + ABZR87_RS03695 0.44 -1.3
770,079 - ABZR87_RS03695 0.45 -1.1
770,091 + ABZR87_RS03695 0.48 +0.6
770,092 - ABZR87_RS03695 0.49 +1.3
770,092 - ABZR87_RS03695 0.49 +1.8
770,092 - ABZR87_RS03695 0.49 -0.6
770,178 + ABZR87_RS03695 0.74 -2.4
770,249 + +2.4
770,249 + +0.4
770,250 - +0.1
770,250 - -0.0
770,284 - -0.2
770,320 - -1.8
770,399 + ABZR87_RS03700 0.21 -0.3
770,399 + ABZR87_RS03700 0.21 -3.5
770,399 + ABZR87_RS03700 0.21 -1.3
770,399 + ABZR87_RS03700 0.21 +0.6
770,400 - ABZR87_RS03700 0.21 +0.3
770,400 - ABZR87_RS03700 0.21 +0.3
770,400 - ABZR87_RS03700 0.21 -2.7
770,464 - ABZR87_RS03700 0.33 +0.1
770,464 - ABZR87_RS03700 0.33 +0.4
770,464 - ABZR87_RS03700 0.33 -2.4
770,464 - ABZR87_RS03700 0.33 +0.1
770,464 - ABZR87_RS03700 0.33 +0.7
770,464 - ABZR87_RS03700 0.33 +0.5
770,464 - ABZR87_RS03700 0.33 -0.4
770,556 + ABZR87_RS03700 0.49 -0.5
770,556 + ABZR87_RS03700 0.49 +0.0
770,556 + ABZR87_RS03700 0.49 -0.0
770,557 - ABZR87_RS03700 0.49 +0.3
770,584 + ABZR87_RS03700 0.54 +4.0
770,585 - ABZR87_RS03700 0.54 +1.0
770,621 + ABZR87_RS03700 0.61 -1.9
770,622 - ABZR87_RS03700 0.61 +0.0
770,622 - ABZR87_RS03700 0.61 +0.1
770,652 - ABZR87_RS03700 0.66 +0.0
770,671 - ABZR87_RS03700 0.70 -0.2
770,747 + ABZR87_RS03700 0.83 +1.9
770,747 + ABZR87_RS03700 0.83 +0.9

Or see this region's nucleotide sequence