Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2302

Experiment: Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2300 and BT2301 are separated by 145 nucleotidesBT2301 and BT2302 are separated by 12 nucleotidesBT2302 and BT2303 are separated by 3 nucleotides BT2300: BT2300 - conserved protein found in conjugate transposon (NCBI ptt file), at 2,875,872 to 2,876,171 BT2300 BT2301: BT2301 - conserved protein found in conjugate transposon (NCBI ptt file), at 2,876,317 to 2,877,039 BT2301 BT2302: BT2302 - conserved protein found in conjugate transposon (NCBI ptt file), at 2,877,052 to 2,877,414 BT2302 BT2303: BT2303 - conserved protein found in conjugate transposon (NCBI ptt file), at 2,877,418 to 2,878,176 BT2303 Position (kb) 2877 2878Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2876.056 kb on + strand, within BT2300at 2876.057 kb on - strand, within BT2300at 2876.172 kb on - strandat 2876.231 kb on + strandat 2876.270 kb on + strandat 2876.416 kb on + strand, within BT2301at 2876.430 kb on + strand, within BT2301at 2877.005 kb on + strandat 2877.005 kb on + strandat 2877.009 kb on + strandat 2877.015 kb on + strandat 2877.019 kb on + strandat 2877.218 kb on + strand, within BT2302at 2877.391 kb on + strandat 2877.415 kb on - strandat 2877.419 kb on + strandat 2877.419 kb on + strandat 2877.419 kb on + strandat 2877.522 kb on + strand, within BT2303at 2877.522 kb on + strand, within BT2303at 2877.623 kb on + strand, within BT2303at 2877.624 kb on - strand, within BT2303at 2877.668 kb on + strand, within BT2303at 2877.782 kb on + strand, within BT2303at 2877.782 kb on + strand, within BT2303at 2878.091 kb on + strand, within BT2303at 2878.190 kb on + strandat 2878.324 kb on + strandat 2878.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM
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2,876,056 + BT2300 0.61 -1.5
2,876,057 - BT2300 0.62 -0.4
2,876,172 - -2.0
2,876,231 + -2.0
2,876,270 + +0.0
2,876,416 + BT2301 0.14 -2.8
2,876,430 + BT2301 0.16 -0.7
2,877,005 + -1.8
2,877,005 + -1.6
2,877,009 + -2.3
2,877,015 + +0.8
2,877,019 + +1.0
2,877,218 + BT2302 0.46 -0.5
2,877,391 + -2.0
2,877,415 - -2.3
2,877,419 + -0.7
2,877,419 + +0.0
2,877,419 + -0.9
2,877,522 + BT2303 0.14 +0.1
2,877,522 + BT2303 0.14 -0.6
2,877,623 + BT2303 0.27 -2.0
2,877,624 - BT2303 0.27 -1.0
2,877,668 + BT2303 0.33 +3.0
2,877,782 + BT2303 0.48 -1.0
2,877,782 + BT2303 0.48 -1.5
2,878,091 + BT2303 0.89 -3.4
2,878,190 + +0.0
2,878,324 + -1.0
2,878,324 + -4.6

Or see this region's nucleotide sequence