Experiment: Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0541 and BT0542 are separated by 172 nucleotides BT0542 and BT0543 are separated by 121 nucleotides BT0543 and BT0544 are separated by 55 nucleotides
BT0541: BT0541 - Polyphosphate kinase (NCBI ptt file), at 664,997 to 667,114
BT0541
BT0542: BT0542 - conserved hypothetical protein (NCBI ptt file), at 667,287 to 667,865
BT0542
BT0543: BT0543 - glutamine synthetase (NCBI ptt file), at 667,987 to 670,176
BT0543
BT0544: BT0544 - ammonium transporter (NCBI ptt file), at 670,232 to 671,689
BT0544
Position (kb) 667
668
669
670
671 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 667.011 kb on - strand at 667.220 kb on + strand at 667.228 kb on + strand at 667.239 kb on - strand at 667.284 kb on + strand at 667.302 kb on + strand at 667.377 kb on + strand, within BT0542 at 667.575 kb on - strand, within BT0542 at 667.718 kb on + strand, within BT0542 at 667.718 kb on + strand, within BT0542 at 667.719 kb on - strand, within BT0542 at 667.719 kb on - strand, within BT0542 at 667.839 kb on - strand at 667.858 kb on + strand at 667.947 kb on + strand at 667.947 kb on + strand at 667.964 kb on - strand at 667.994 kb on - strand at 668.065 kb on - strand at 668.065 kb on - strand at 668.101 kb on - strand at 668.166 kb on - strand at 668.176 kb on + strand at 668.292 kb on + strand, within BT0543 at 668.293 kb on - strand, within BT0543 at 668.293 kb on - strand, within BT0543 at 668.293 kb on - strand, within BT0543 at 668.332 kb on - strand, within BT0543 at 668.461 kb on - strand, within BT0543 at 668.483 kb on + strand, within BT0543 at 668.543 kb on - strand, within BT0543 at 668.614 kb on + strand, within BT0543 at 668.811 kb on + strand, within BT0543 at 669.061 kb on + strand, within BT0543 at 669.147 kb on + strand, within BT0543 at 669.417 kb on - strand, within BT0543 at 669.482 kb on - strand, within BT0543 at 669.661 kb on - strand, within BT0543 at 669.662 kb on + strand, within BT0543 at 669.663 kb on - strand, within BT0543 at 669.806 kb on - strand, within BT0543 at 669.806 kb on - strand, within BT0543 at 670.009 kb on - strand at 670.029 kb on - strand at 670.077 kb on - strand at 670.080 kb on + strand at 670.080 kb on + strand at 670.150 kb on + strand at 670.176 kb on + strand at 670.176 kb on + strand at 670.199 kb on + strand at 670.239 kb on + strand at 670.239 kb on + strand at 670.239 kb on + strand at 670.521 kb on - strand, within BT0544 at 670.531 kb on + strand, within BT0544 at 670.532 kb on - strand, within BT0544 at 670.557 kb on - strand, within BT0544 at 670.599 kb on - strand, within BT0544 at 670.835 kb on + strand, within BT0544 at 670.924 kb on + strand, within BT0544 at 670.925 kb on - strand, within BT0544 at 671.099 kb on - strand, within BT0544 at 671.104 kb on + strand, within BT0544 at 671.105 kb on - strand, within BT0544 at 671.107 kb on + strand, within BT0544 at 671.110 kb on - strand, within BT0544 at 671.118 kb on + strand, within BT0544
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM remove 667,011 - -1.6 667,220 + -0.3 667,228 + -1.0 667,239 - -1.6 667,284 + -1.6 667,302 + -0.0 667,377 + BT0542 0.16 -1.0 667,575 - BT0542 0.50 -3.0 667,718 + BT0542 0.74 -0.0 667,718 + BT0542 0.74 -0.0 667,719 - BT0542 0.75 -0.0 667,719 - BT0542 0.75 +0.4 667,839 - +0.3 667,858 + -1.6 667,947 + -0.2 667,947 + +0.5 667,964 - -1.0 667,994 - +0.1 668,065 - -0.3 668,065 - -0.0 668,101 - -2.6 668,166 - +1.4 668,176 + -0.0 668,292 + BT0543 0.14 -1.0 668,293 - BT0543 0.14 +0.8 668,293 - BT0543 0.14 -2.4 668,293 - BT0543 0.14 -1.6 668,332 - BT0543 0.16 -1.6 668,461 - BT0543 0.22 +1.8 668,483 + BT0543 0.23 -0.0 668,543 - BT0543 0.25 -1.0 668,614 + BT0543 0.29 -0.0 668,811 + BT0543 0.38 -1.0 669,061 + BT0543 0.49 -3.2 669,147 + BT0543 0.53 -0.0 669,417 - BT0543 0.65 -0.0 669,482 - BT0543 0.68 -0.0 669,661 - BT0543 0.76 -0.0 669,662 + BT0543 0.76 -0.5 669,663 - BT0543 0.77 +1.0 669,806 - BT0543 0.83 -0.0 669,806 - BT0543 0.83 -2.4 670,009 - -1.5 670,029 - -0.0 670,077 - -1.0 670,080 + -1.6 670,080 + +1.3 670,150 + +0.5 670,176 + -1.0 670,176 + -0.0 670,199 + -4.6 670,239 + -3.9 670,239 + -1.6 670,239 + -0.8 670,521 - BT0544 0.20 -0.6 670,531 + BT0544 0.21 -1.0 670,532 - BT0544 0.21 -2.4 670,557 - BT0544 0.22 -2.6 670,599 - BT0544 0.25 -1.7 670,835 + BT0544 0.41 -1.0 670,924 + BT0544 0.47 -0.0 670,925 - BT0544 0.48 +0.7 671,099 - BT0544 0.59 -2.0 671,104 + BT0544 0.60 +0.4 671,105 - BT0544 0.60 -1.0 671,107 + BT0544 0.60 +0.2 671,110 - BT0544 0.60 -1.6 671,118 + BT0544 0.61 -0.0
Or see this region's nucleotide sequence