Experiment: Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0388 and BT0389 are separated by 4 nucleotides BT0389 and BT0390 are separated by 4 nucleotides BT0390 and BT0391 are separated by 208 nucleotides
BT0388: BT0388 - galactoside O-acetyltransferase (NCBI ptt file), at 477,803 to 478,426
BT0388
BT0389: BT0389 - putative galactoside acetyltransferase (NCBI ptt file), at 478,431 to 478,976
BT0389
BT0390: BT0390 - putative O-antigen export protein (NCBI ptt file), at 478,981 to 480,345
BT0390
BT0391: BT0391 - putative protein involved in capsular polysaccharide biosynthesis (NCBI ptt file), at 480,554 to 481,705
BT0391
Position (kb) 478
479
480
481 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 478.022 kb on - strand, within BT0388 at 478.078 kb on + strand, within BT0388 at 478.123 kb on - strand, within BT0388 at 478.135 kb on + strand, within BT0388 at 478.136 kb on - strand, within BT0388 at 478.280 kb on - strand, within BT0388 at 478.352 kb on - strand, within BT0388 at 478.354 kb on - strand, within BT0388 at 478.378 kb on + strand at 478.393 kb on - strand at 478.435 kb on + strand at 478.593 kb on - strand, within BT0389 at 478.672 kb on + strand, within BT0389 at 478.673 kb on - strand, within BT0389 at 478.730 kb on + strand, within BT0389 at 478.920 kb on - strand, within BT0389 at 479.103 kb on + strand at 479.103 kb on + strand at 479.196 kb on + strand, within BT0390 at 479.305 kb on - strand, within BT0390 at 479.378 kb on + strand, within BT0390 at 479.489 kb on + strand, within BT0390 at 479.490 kb on - strand, within BT0390 at 479.556 kb on + strand, within BT0390 at 479.591 kb on - strand, within BT0390 at 479.591 kb on - strand, within BT0390 at 479.602 kb on - strand, within BT0390 at 479.649 kb on - strand, within BT0390 at 479.671 kb on - strand, within BT0390 at 479.753 kb on + strand, within BT0390 at 479.815 kb on - strand, within BT0390 at 479.889 kb on - strand, within BT0390 at 480.054 kb on + strand, within BT0390 at 480.096 kb on + strand, within BT0390 at 480.099 kb on + strand, within BT0390 at 480.201 kb on + strand, within BT0390 at 480.326 kb on + strand at 480.339 kb on + strand at 480.450 kb on - strand at 480.563 kb on - strand at 480.590 kb on + strand at 480.646 kb on + strand at 480.759 kb on + strand, within BT0391 at 480.761 kb on + strand, within BT0391 at 480.881 kb on + strand, within BT0391 at 480.917 kb on - strand, within BT0391 at 481.013 kb on - strand, within BT0391 at 481.028 kb on - strand, within BT0391 at 481.114 kb on + strand, within BT0391 at 481.132 kb on + strand, within BT0391 at 481.184 kb on - strand, within BT0391 at 481.194 kb on + strand, within BT0391 at 481.261 kb on - strand, within BT0391 at 481.312 kb on + strand, within BT0391
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM remove 478,022 - BT0388 0.35 +3.1 478,078 + BT0388 0.44 -1.6 478,123 - BT0388 0.51 -2.2 478,135 + BT0388 0.53 +1.8 478,136 - BT0388 0.53 -2.3 478,280 - BT0388 0.76 -1.0 478,352 - BT0388 0.88 +0.3 478,354 - BT0388 0.88 -3.7 478,378 + -2.0 478,393 - -1.0 478,435 + -2.0 478,593 - BT0389 0.30 -2.0 478,672 + BT0389 0.44 -1.0 478,673 - BT0389 0.44 -0.4 478,730 + BT0389 0.55 -2.3 478,920 - BT0389 0.90 -1.0 479,103 + -2.3 479,103 + -1.0 479,196 + BT0390 0.16 -2.0 479,305 - BT0390 0.24 -1.6 479,378 + BT0390 0.29 -2.4 479,489 + BT0390 0.37 -1.0 479,490 - BT0390 0.37 -0.0 479,556 + BT0390 0.42 -2.6 479,591 - BT0390 0.45 -3.4 479,591 - BT0390 0.45 -0.0 479,602 - BT0390 0.45 -2.4 479,649 - BT0390 0.49 -0.0 479,671 - BT0390 0.51 -2.0 479,753 + BT0390 0.57 -4.4 479,815 - BT0390 0.61 -1.0 479,889 - BT0390 0.67 -2.0 480,054 + BT0390 0.79 -0.0 480,096 + BT0390 0.82 -2.7 480,099 + BT0390 0.82 -0.0 480,201 + BT0390 0.89 +2.5 480,326 + -0.0 480,339 + +3.1 480,450 - -2.0 480,563 - -1.3 480,590 + -1.6 480,646 + -1.0 480,759 + BT0391 0.18 -1.1 480,761 + BT0391 0.18 -0.0 480,881 + BT0391 0.28 +1.1 480,917 - BT0391 0.32 -0.0 481,013 - BT0391 0.40 -1.0 481,028 - BT0391 0.41 -1.0 481,114 + BT0391 0.49 -1.6 481,132 + BT0391 0.50 -0.8 481,184 - BT0391 0.55 -0.0 481,194 + BT0391 0.56 -0.0 481,261 - BT0391 0.61 -0.4 481,312 + BT0391 0.66 -1.6
Or see this region's nucleotide sequence