Experiment: MoLS4 with L-Tyrosine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gap-1 and DVU0566 are separated by 19 nucleotides DVU0566 and DVU0567 are separated by 214 nucleotides DVU0567 and DVU0568 are separated by 121 nucleotides
DVU0565: gap-1 - glyceraldehyde 3-phosphate dehydrogenase (TIGR), at 630,087 to 631,103
gap-1
DVU0566: DVU0566 - GAF domain protein (TIGR), at 631,123 to 631,680
DVU0566
DVU0567: DVU0567 - TerC family protein (TIGR), at 631,895 to 632,974
DVU0567
DVU0568: DVU0568 - rhodanese-like domain protein (TIGR), at 633,096 to 634,136
DVU0568
Position (kb) 631
632
633 Strain fitness (log2 ratio) -2
-1
0
1
2 at 630.964 kb on + strand, within gap-1 at 630.972 kb on + strand, within gap-1 at 631.017 kb on - strand at 631.285 kb on + strand, within DVU0566 at 631.335 kb on + strand, within DVU0566 at 631.348 kb on - strand, within DVU0566 at 631.407 kb on + strand, within DVU0566 at 631.422 kb on - strand, within DVU0566 at 631.469 kb on - strand, within DVU0566 at 631.476 kb on - strand, within DVU0566 at 631.623 kb on - strand, within DVU0566 at 631.635 kb on - strand at 631.696 kb on + strand at 631.751 kb on - strand at 631.968 kb on + strand at 631.973 kb on + strand at 631.981 kb on - strand at 632.105 kb on - strand, within DVU0567 at 632.110 kb on - strand, within DVU0567 at 632.190 kb on + strand, within DVU0567 at 632.255 kb on + strand, within DVU0567 at 632.255 kb on + strand, within DVU0567 at 632.263 kb on - strand, within DVU0567 at 632.295 kb on - strand, within DVU0567 at 632.382 kb on - strand, within DVU0567 at 632.393 kb on + strand, within DVU0567 at 632.406 kb on + strand, within DVU0567 at 632.453 kb on + strand, within DVU0567 at 632.634 kb on + strand, within DVU0567 at 632.642 kb on - strand, within DVU0567 at 632.642 kb on - strand, within DVU0567 at 632.694 kb on + strand, within DVU0567 at 632.765 kb on + strand, within DVU0567 at 632.776 kb on + strand, within DVU0567 at 632.791 kb on + strand, within DVU0567 at 632.902 kb on + strand at 633.062 kb on - strand at 633.085 kb on - strand at 633.093 kb on - strand at 633.119 kb on - strand at 633.210 kb on + strand, within DVU0568 at 633.251 kb on - strand, within DVU0568 at 633.326 kb on + strand, within DVU0568 at 633.326 kb on + strand, within DVU0568 at 633.334 kb on - strand, within DVU0568 at 633.462 kb on - strand, within DVU0568 at 633.482 kb on - strand, within DVU0568 at 633.510 kb on - strand, within DVU0568 at 633.510 kb on - strand, within DVU0568 at 633.530 kb on + strand, within DVU0568 at 633.535 kb on + strand, within DVU0568 at 633.538 kb on - strand, within DVU0568 at 633.543 kb on - strand, within DVU0568 at 633.548 kb on - strand, within DVU0568 at 633.584 kb on + strand, within DVU0568 at 633.697 kb on + strand, within DVU0568 at 633.762 kb on - strand, within DVU0568 at 633.772 kb on + strand, within DVU0568 at 633.780 kb on - strand, within DVU0568 at 633.790 kb on + strand, within DVU0568 at 633.798 kb on - strand, within DVU0568 at 633.858 kb on - strand, within DVU0568 at 633.863 kb on - strand, within DVU0568 at 633.863 kb on - strand, within DVU0568 at 633.907 kb on + strand, within DVU0568 at 633.907 kb on + strand, within DVU0568 at 633.915 kb on - strand, within DVU0568 at 633.919 kb on + strand, within DVU0568 at 633.935 kb on + strand, within DVU0568
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Tyrosine as nutrient 10mM remove 630,964 + gap-1 DVU0565 0.86 -0.5 630,972 + gap-1 DVU0565 0.87 -1.0 631,017 - +1.5 631,285 + DVU0566 0.29 +0.7 631,335 + DVU0566 0.38 +1.1 631,348 - DVU0566 0.40 +0.2 631,407 + DVU0566 0.51 +0.8 631,422 - DVU0566 0.54 -0.4 631,469 - DVU0566 0.62 -0.4 631,476 - DVU0566 0.63 -0.9 631,623 - DVU0566 0.90 -1.2 631,635 - -0.2 631,696 + -1.1 631,751 - -1.7 631,968 + -0.9 631,973 + -0.3 631,981 - -0.0 632,105 - DVU0567 0.19 -0.5 632,110 - DVU0567 0.20 -0.7 632,190 + DVU0567 0.27 -0.1 632,255 + DVU0567 0.33 -0.4 632,255 + DVU0567 0.33 +0.6 632,263 - DVU0567 0.34 -0.1 632,295 - DVU0567 0.37 -1.4 632,382 - DVU0567 0.45 -1.7 632,393 + DVU0567 0.46 +0.4 632,406 + DVU0567 0.47 -0.6 632,453 + DVU0567 0.52 -0.1 632,634 + DVU0567 0.68 -1.9 632,642 - DVU0567 0.69 +1.1 632,642 - DVU0567 0.69 -0.3 632,694 + DVU0567 0.74 -0.9 632,765 + DVU0567 0.81 +2.1 632,776 + DVU0567 0.82 -0.9 632,791 + DVU0567 0.83 -2.1 632,902 + +0.5 633,062 - -0.4 633,085 - -0.8 633,093 - -1.0 633,119 - +0.7 633,210 + DVU0568 0.11 +0.4 633,251 - DVU0568 0.15 -2.2 633,326 + DVU0568 0.22 -0.3 633,326 + DVU0568 0.22 -0.0 633,334 - DVU0568 0.23 -1.6 633,462 - DVU0568 0.35 -0.5 633,482 - DVU0568 0.37 -0.3 633,510 - DVU0568 0.40 -0.9 633,510 - DVU0568 0.40 -0.0 633,530 + DVU0568 0.42 +2.0 633,535 + DVU0568 0.42 -0.4 633,538 - DVU0568 0.42 +0.2 633,543 - DVU0568 0.43 +0.2 633,548 - DVU0568 0.43 -0.6 633,584 + DVU0568 0.47 +0.3 633,697 + DVU0568 0.58 -0.5 633,762 - DVU0568 0.64 +0.9 633,772 + DVU0568 0.65 +1.5 633,780 - DVU0568 0.66 +0.7 633,790 + DVU0568 0.67 -0.5 633,798 - DVU0568 0.67 +0.7 633,858 - DVU0568 0.73 +0.7 633,863 - DVU0568 0.74 +0.2 633,863 - DVU0568 0.74 +0.0 633,907 + DVU0568 0.78 +0.1 633,907 + DVU0568 0.78 -1.0 633,915 - DVU0568 0.79 -0.8 633,919 + DVU0568 0.79 -0.5 633,935 + DVU0568 0.81 +0.4
Or see this region's nucleotide sequence