Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2873

Experiment: KB with Veratric Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2871 and Psyr_2872 are separated by 38 nucleotidesPsyr_2872 and Psyr_2873 are separated by 148 nucleotidesPsyr_2873 and Psyr_2874 are separated by 7 nucleotidesPsyr_2874 and Psyr_2875 overlap by 4 nucleotides Psyr_2871: Psyr_2871 - CDS, at 3,445,461 to 3,446,675 _2871 Psyr_2872: Psyr_2872 - hypothetical protein, at 3,446,714 to 3,446,953 _2872 Psyr_2873: Psyr_2873 - Acyl-CoA dehydrogenase, C-terminal, at 3,447,102 to 3,448,340 _2873 Psyr_2874: Psyr_2874 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,448,348 to 3,449,334 _2874 Psyr_2875: Psyr_2875 - monosaccharide ABC transporter membrane protein, CUT2 family, at 3,449,331 to 3,450,335 _2875 Position (kb) 3447 3448 3449Strain fitness (log2 ratio) -2 -1 0 1 2at 3446.186 kb on - strand, within Psyr_2871at 3446.317 kb on + strand, within Psyr_2871at 3446.317 kb on + strand, within Psyr_2871at 3446.446 kb on + strand, within Psyr_2871at 3446.446 kb on + strand, within Psyr_2871at 3446.446 kb on + strand, within Psyr_2871at 3446.446 kb on + strand, within Psyr_2871at 3446.446 kb on + strand, within Psyr_2871at 3446.447 kb on - strand, within Psyr_2871at 3446.447 kb on - strand, within Psyr_2871at 3446.447 kb on - strand, within Psyr_2871at 3446.484 kb on - strand, within Psyr_2871at 3446.888 kb on + strand, within Psyr_2872at 3446.888 kb on + strand, within Psyr_2872at 3446.889 kb on - strand, within Psyr_2872at 3447.096 kb on + strandat 3447.573 kb on + strand, within Psyr_2873at 3447.576 kb on + strand, within Psyr_2873at 3447.577 kb on - strand, within Psyr_2873at 3447.577 kb on - strand, within Psyr_2873at 3447.577 kb on - strand, within Psyr_2873at 3447.615 kb on + strand, within Psyr_2873at 3447.616 kb on - strand, within Psyr_2873at 3447.616 kb on - strand, within Psyr_2873at 3447.616 kb on - strand, within Psyr_2873at 3447.799 kb on - strand, within Psyr_2873at 3448.032 kb on + strand, within Psyr_2873at 3448.033 kb on - strandat 3448.143 kb on - strand, within Psyr_2873at 3448.251 kb on + strandat 3448.251 kb on + strandat 3448.252 kb on - strandat 3448.252 kb on - strandat 3448.349 kb on + strandat 3448.349 kb on + strandat 3448.436 kb on + strandat 3448.703 kb on + strand, within Psyr_2874at 3448.704 kb on - strand, within Psyr_2874at 3448.706 kb on + strand, within Psyr_2874at 3448.707 kb on - strand, within Psyr_2874at 3448.707 kb on - strand, within Psyr_2874at 3448.871 kb on + strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3448.872 kb on - strand, within Psyr_2874at 3449.104 kb on + strandat 3449.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Veratric Acid 10 mM
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3,446,186 - Psyr_2871 0.60 -0.8
3,446,317 + Psyr_2871 0.70 -1.1
3,446,317 + Psyr_2871 0.70 -0.2
3,446,446 + Psyr_2871 0.81 -0.8
3,446,446 + Psyr_2871 0.81 -0.1
3,446,446 + Psyr_2871 0.81 +1.4
3,446,446 + Psyr_2871 0.81 -0.6
3,446,446 + Psyr_2871 0.81 -0.5
3,446,447 - Psyr_2871 0.81 -0.0
3,446,447 - Psyr_2871 0.81 +2.0
3,446,447 - Psyr_2871 0.81 -0.1
3,446,484 - Psyr_2871 0.84 -0.3
3,446,888 + Psyr_2872 0.72 +0.6
3,446,888 + Psyr_2872 0.72 +1.2
3,446,889 - Psyr_2872 0.73 -0.4
3,447,096 + -0.3
3,447,573 + Psyr_2873 0.38 +1.0
3,447,576 + Psyr_2873 0.38 +0.3
3,447,577 - Psyr_2873 0.38 -2.2
3,447,577 - Psyr_2873 0.38 +1.2
3,447,577 - Psyr_2873 0.38 +0.7
3,447,615 + Psyr_2873 0.41 +2.2
3,447,616 - Psyr_2873 0.41 -1.2
3,447,616 - Psyr_2873 0.41 +1.2
3,447,616 - Psyr_2873 0.41 +1.7
3,447,799 - Psyr_2873 0.56 +0.8
3,448,032 + Psyr_2873 0.75 +0.3
3,448,033 - +1.7
3,448,143 - Psyr_2873 0.84 +0.2
3,448,251 + -0.7
3,448,251 + -0.5
3,448,252 - +1.2
3,448,252 - +1.1
3,448,349 + +1.2
3,448,349 + -1.0
3,448,436 + -0.8
3,448,703 + Psyr_2874 0.36 -0.2
3,448,704 - Psyr_2874 0.36 -0.8
3,448,706 + Psyr_2874 0.36 -0.4
3,448,707 - Psyr_2874 0.36 -0.4
3,448,707 - Psyr_2874 0.36 -0.7
3,448,871 + Psyr_2874 0.53 -0.7
3,448,872 - Psyr_2874 0.53 -0.0
3,448,872 - Psyr_2874 0.53 -0.7
3,448,872 - Psyr_2874 0.53 +0.0
3,448,872 - Psyr_2874 0.53 +0.6
3,448,872 - Psyr_2874 0.53 +0.9
3,448,872 - Psyr_2874 0.53 +0.2
3,449,104 + +1.7
3,449,328 + +1.2

Or see this region's nucleotide sequence