Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2660

Experiment: KB with Veratric Acid 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Veratric Acid 10 mM
3,230,476	+		Psyr_2659	0.35	+0.9
3,230,476	+		Psyr_2659	0.35	-2.3
3,230,476	+		Psyr_2659	0.35	-1.5
3,230,480	+		Psyr_2659	0.35	-0.4
3,230,480	+		Psyr_2659	0.35	-1.0
3,230,501	+		Psyr_2659	0.37	+0.2
3,230,501	+		Psyr_2659	0.37	-0.4
3,230,501	+		Psyr_2659	0.37	+0.2
3,230,501	+		Psyr_2659	0.37	-1.8
3,230,501	+		Psyr_2659	0.37	+0.3
3,230,501	+		Psyr_2659	0.37	+1.2
3,230,502	-		Psyr_2659	0.37	-0.8
3,230,502	-		Psyr_2659	0.37	-1.1
3,230,502	-		Psyr_2659	0.37	+0.7
3,230,505	+		Psyr_2659	0.37	-2.7
3,230,505	+		Psyr_2659	0.37	-3.3
3,230,505	+		Psyr_2659	0.37	-0.1
3,230,505	+		Psyr_2659	0.37	-0.8
3,230,505	+		Psyr_2659	0.37	-1.3
3,230,506	-		Psyr_2659	0.37	+2.2
3,230,506	-		Psyr_2659	0.37	-0.0
3,230,506	-		Psyr_2659	0.37	-0.2
3,230,506	-		Psyr_2659	0.37	-0.1
3,230,506	-		Psyr_2659	0.37	-1.9
3,230,506	-		Psyr_2659	0.37	+0.4
3,230,509	+				-0.8
3,230,547	-		Psyr_2659	0.40	+0.4
3,230,561	+		Psyr_2659	0.42	-0.6
3,230,561	+		Psyr_2659	0.42	+0.6
3,230,561	+		Psyr_2659	0.42	-0.2
3,230,561	+		Psyr_2659	0.42	-0.8
3,230,561	+		Psyr_2659	0.42	-0.4
3,230,562	-		Psyr_2659	0.42	+0.8
3,230,562	-		Psyr_2659	0.42	-1.1
3,230,564	+		Psyr_2659	0.42	-1.1
3,230,575	+		Psyr_2659	0.43	-1.8
3,230,575	+		Psyr_2659	0.43	+0.8
3,230,575	+		Psyr_2659	0.43	-0.4
3,230,575	+		Psyr_2659	0.43	-2.4
3,230,576	-		Psyr_2659	0.43	-1.4
3,230,576	-		Psyr_2659	0.43	-0.6
3,230,576	-		Psyr_2659	0.43	-1.1
3,230,576	-		Psyr_2659	0.43	+1.9
3,230,576	-		Psyr_2659	0.43	-1.1
3,230,576	-		Psyr_2659	0.43	-0.6
3,230,576	-		Psyr_2659	0.43	-1.2
3,230,576	-		Psyr_2659	0.43	-1.3
3,230,645	-		Psyr_2659	0.48	+1.8
3,230,645	-		Psyr_2659	0.48	-0.7
3,230,681	+		Psyr_2659	0.51	-1.1
3,230,682	-		Psyr_2659	0.51	+0.3
3,230,683	+		Psyr_2659	0.51	-1.6
3,230,683	+		Psyr_2659	0.51	+1.2
3,230,683	+				-2.3
3,230,683	+		Psyr_2659	0.51	-0.4
3,230,683	+		Psyr_2659	0.51	-0.2
3,230,683	+				-0.1
3,230,683	+		Psyr_2659	0.51	-0.6
3,230,683	+		Psyr_2659	0.51	-0.4
3,230,684	-		Psyr_2659	0.51	+0.4
3,230,684	-		Psyr_2659	0.51	+0.4
3,230,684	-		Psyr_2659	0.51	-0.2
3,230,684	-		Psyr_2659	0.51	-2.8
3,230,684	-		Psyr_2659	0.51	+2.0
3,230,745	+		Psyr_2659	0.56	-1.4
3,230,766	+		Psyr_2659	0.58	+0.3
3,230,766	+		Psyr_2659	0.58	-0.8
3,230,766	+		Psyr_2659	0.58	+0.6
3,230,766	+		Psyr_2659	0.58	-0.7
3,230,766	+		Psyr_2659	0.58	-0.2
3,230,766	+		Psyr_2659	0.58	-0.4
3,230,766	+		Psyr_2659	0.58	-0.8
3,230,766	+		Psyr_2659	0.58	+0.3
3,230,767	-		Psyr_2659	0.58	-2.1
3,230,767	-		Psyr_2659	0.58	+0.7
3,230,767	-		Psyr_2659	0.58	+1.2
3,230,767	-		Psyr_2659	0.58	+1.4
3,230,767	-		Psyr_2659	0.58	+0.9
3,230,811	+		Psyr_2659	0.61	-3.1
3,230,973	-		Psyr_2659	0.74	-0.8
3,231,068	-		Psyr_2659	0.81	-1.3
3,231,086	+		Psyr_2659	0.83	-0.4
3,231,087	-		Psyr_2659	0.83	-0.5
3,231,097	+		Psyr_2659	0.83	-1.4
3,231,097	+		Psyr_2659	0.83	-0.5
3,231,097	+		Psyr_2659	0.83	-0.7
3,231,122	+		Psyr_2659	0.85	-0.4
3,231,122	+		Psyr_2659	0.85	-2.0
3,231,165	+		Psyr_2659	0.89	+0.4
3,231,166	-		Psyr_2659	0.89	-0.4
3,231,286	+				+0.7
3,231,287	-				+1.4
3,231,317	-				+0.6
3,231,317	-				+1.3
3,231,328	+				-0.7
3,231,328	+				-2.4
3,231,404	+				-0.1
3,231,404	+				-2.0
3,231,405	-				+0.2
3,231,408	+				-1.6
3,231,408	+				-1.4
3,231,408	+				-0.1
3,231,408	+				+0.8
3,231,408	+				+0.5
3,231,409	-				+0.1
3,231,409	-				+0.1
3,231,409	-				-1.1
3,231,428	+				-1.5
3,231,429	-				+0.5
3,231,463	-				-0.5
3,231,463	-				+0.6
3,231,509	+		Psyr_2660	0.17	-1.3
3,231,510	-		Psyr_2660	0.17	-1.1
3,231,510	-		Psyr_2660	0.17	-0.0
3,231,564	-		Psyr_2660	0.37	+2.2
3,231,564	-		Psyr_2660	0.37	-1.8
3,231,639	+		Psyr_2660	0.63	-1.5
3,231,640	-		Psyr_2660	0.63	-1.1
3,231,648	+		Psyr_2660	0.66	-0.4
3,231,648	+		Psyr_2660	0.66	-0.6
3,231,648	+		Psyr_2660	0.66	-0.1
3,231,648	+		Psyr_2660	0.66	+0.2
3,231,648	+				+2.2
3,231,648	+		Psyr_2660	0.66	+0.0
3,231,648	+		Psyr_2660	0.66	-1.5
3,231,648	+		Psyr_2660	0.66	-0.1
3,231,648	+		Psyr_2660	0.66	+0.2
3,231,648	+		Psyr_2660	0.66	+0.1
3,231,648	+		Psyr_2660	0.66	-0.4
3,231,648	+		Psyr_2660	0.66	-1.0
3,231,648	+		Psyr_2660	0.66	+0.1
3,231,648	+		Psyr_2660	0.66	+0.0
3,231,648	+		Psyr_2660	0.66	-2.6
3,231,648	+		Psyr_2660	0.66	+1.0
3,231,648	+		Psyr_2660	0.66	+1.2
3,231,649	-		Psyr_2660	0.67	+0.5
3,231,649	-		Psyr_2660	0.67	+1.0
3,231,649	-		Psyr_2660	0.67	-0.3
3,231,649	-		Psyr_2660	0.67	-0.1
3,231,649	-		Psyr_2660	0.67	-0.1
3,231,649	-		Psyr_2660	0.67	-0.4
3,231,649	-		Psyr_2660	0.67	-0.4
3,231,649	-		Psyr_2660	0.67	+0.2
3,231,649	-		Psyr_2660	0.67	-1.8
3,231,649	-		Psyr_2660	0.67	-0.4
3,231,649	-		Psyr_2660	0.67	-0.5
3,231,649	-		Psyr_2660	0.67	-0.2
3,231,680	+		Psyr_2660	0.78	-0.1
3,231,681	-		Psyr_2660	0.78	-0.1
3,231,681	-		Psyr_2660	0.78	-0.4
3,231,718	+				+0.5
3,231,719	-				-1.0
3,231,735	-				+0.0
3,231,735	-				-1.4
3,231,833	+				-0.4
3,231,849	+				-0.0
3,231,850	-				+0.9
3,231,877	+				-1.6
3,231,878	-				+1.8
3,231,878	-				+1.8
3,231,911	+				-1.4
3,231,911	+				-2.3
3,231,911	+				+0.3
3,231,911	+				+0.7
3,231,912	-				-0.5
3,231,912	-				+0.5
3,231,912	-				+0.7
3,231,912	-				-0.8
3,231,918	+				+0.1
3,231,942	+		Psyr_2661	0.10	-0.1
3,232,022	-		Psyr_2661	0.17	-1.4
3,232,109	-		Psyr_2661	0.26	-0.7
3,232,192	+		Psyr_2661	0.33	-0.5
3,232,193	-		Psyr_2661	0.33	+2.4
3,232,270	+		Psyr_2661	0.40	+1.2
3,232,270	+		Psyr_2661	0.40	-0.7
3,232,270	+		Psyr_2661	0.40	+0.9
3,232,270	+		Psyr_2661	0.40	-0.7
3,232,271	-		Psyr_2661	0.40	+0.4
3,232,271	-		Psyr_2661	0.40	+0.3
3,232,271	-		Psyr_2661	0.40	-1.2
3,232,271	-		Psyr_2661	0.40	-0.5
3,232,271	-		Psyr_2661	0.40	-0.1
3,232,303	+		Psyr_2661	0.43	-0.1
3,232,303	+		Psyr_2661	0.43	+0.4
3,232,304	-		Psyr_2661	0.43	-1.2
3,232,326	+		Psyr_2661	0.45	-0.4
3,232,326	+		Psyr_2661	0.45	-2.0
3,232,327	-		Psyr_2661	0.46	-0.1
3,232,327	-		Psyr_2661	0.46	-0.5
3,232,327	-		Psyr_2661	0.46	-2.5
3,232,327	-		Psyr_2661	0.46	-1.3
3,232,375	+		Psyr_2661	0.50	-0.8
3,232,376	-		Psyr_2661	0.50	-0.7
3,232,468	+		Psyr_2661	0.59	+0.5
3,232,468	+		Psyr_2661	0.59	-1.2
3,232,469	-		Psyr_2661	0.59	-1.5
3,232,494	+		Psyr_2661	0.61	-1.1
3,232,494	+		Psyr_2661	0.61	-1.9
3,232,494	+		Psyr_2661	0.61	-0.3
3,232,499	-		Psyr_2661	0.61	+1.9
3,232,519	-		Psyr_2661	0.63	-0.6
3,232,564	+		Psyr_2661	0.67	+0.6
3,232,607	-		Psyr_2661	0.71	+2.2
3,232,649	-		Psyr_2661	0.75	-1.6
3,232,649	-		Psyr_2661	0.75	-1.7
3,232,649	-		Psyr_2661	0.75	-0.1
3,232,727	+		Psyr_2661	0.82	-0.1