Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13385 and BPHYT_RS13390 are separated by 158 nucleotides BPHYT_RS13390 and BPHYT_RS13395 are separated by 53 nucleotides BPHYT_RS13395 and BPHYT_RS13400 are separated by 137 nucleotides
BPHYT_RS13385: BPHYT_RS13385 - hypothetical protein, at 3,057,548 to 3,058,756
_RS13385
BPHYT_RS13390: BPHYT_RS13390 - IclR family transcriptional regulator, at 3,058,915 to 3,059,745
_RS13390
BPHYT_RS13395: BPHYT_RS13395 - endoribonuclease L-PSP, at 3,059,799 to 3,060,260
_RS13395
BPHYT_RS13400: BPHYT_RS13400 - hypothetical protein, at 3,060,398 to 3,060,724
_RS13400
Position (kb) 3058
3059
3060 Strain fitness (log2 ratio) -2
-1
0
1 at 3058.281 kb on + strand, within BPHYT_RS13385 at 3058.407 kb on + strand, within BPHYT_RS13385 at 3058.408 kb on - strand, within BPHYT_RS13385 at 3058.731 kb on - strand at 3058.823 kb on + strand at 3058.823 kb on + strand at 3058.824 kb on - strand at 3058.824 kb on - strand at 3058.824 kb on - strand at 3058.824 kb on - strand at 3059.209 kb on + strand, within BPHYT_RS13390 at 3059.743 kb on + strand at 3059.744 kb on - strand at 3060.158 kb on - strand, within BPHYT_RS13395
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 3,058,281 + BPHYT_RS13385 0.61 -0.4 3,058,407 + BPHYT_RS13385 0.71 -0.8 3,058,408 - BPHYT_RS13385 0.71 -0.2 3,058,731 - +0.3 3,058,823 + -0.5 3,058,823 + -0.1 3,058,824 - +0.2 3,058,824 - +0.6 3,058,824 - -0.3 3,058,824 - -2.5 3,059,209 + BPHYT_RS13390 0.35 -1.8 3,059,743 + +0.2 3,059,744 - +0.3 3,060,158 - BPHYT_RS13395 0.78 +0.4
Or see this region's nucleotide sequence