Experiment: MoLS4 with L-Tryptophan as nutrient source 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0897 and DVU0898 are separated by 84 nucleotides DVU0898 and DVU0899 overlap by 4 nucleotides DVU0899 and gmk overlap by 1 nucleotides gmk and pyrF overlap by 1 nucleotides
DVU0897: DVU0897 - RNA modification enzyme, MiaB-family (TIGR), at 989,827 to 991,203
DVU0897
DVU0898: DVU0898 - conserved hypothetical protein (TIGR), at 991,288 to 992,169
DVU0898
DVU0899: DVU0899 - conserved hypothetical protein (TIGR), at 992,166 to 992,426
DVU0899
DVU0900: gmk - guanylate kinase (TIGR), at 992,426 to 993,049
gmk
DVU0901: pyrF - orotidine 5`-phosphate decarboxylase (TIGR), at 993,049 to 993,756
pyrF
Position (kb) 992
993 Strain fitness (log2 ratio) -2
-1
0
1 at 991.218 kb on + strand at 991.279 kb on - strand at 991.291 kb on - strand at 991.349 kb on + strand at 991.355 kb on - strand at 991.372 kb on - strand at 991.395 kb on - strand, within DVU0898 at 991.418 kb on + strand, within DVU0898 at 991.483 kb on - strand, within DVU0898 at 991.504 kb on - strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.546 kb on + strand, within DVU0898 at 991.685 kb on + strand, within DVU0898 at 991.730 kb on + strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.793 kb on - strand, within DVU0898 at 991.821 kb on + strand, within DVU0898 at 991.876 kb on + strand, within DVU0898 at 991.914 kb on + strand, within DVU0898 at 991.937 kb on + strand, within DVU0898 at 991.998 kb on + strand, within DVU0898 at 992.090 kb on - strand at 992.139 kb on - strand at 992.341 kb on - strand, within DVU0899 at 992.367 kb on - strand, within DVU0899
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan as nutrient source 10mM remove 991,218 + -1.5 991,279 - +0.1 991,291 - -0.2 991,349 + +0.1 991,355 - -0.2 991,372 - -2.5 991,395 - DVU0898 0.12 -1.0 991,418 + DVU0898 0.15 -0.0 991,483 - DVU0898 0.22 -0.8 991,504 - DVU0898 0.24 +0.1 991,507 + DVU0898 0.25 -0.6 991,507 + DVU0898 0.25 -0.5 991,546 + DVU0898 0.29 -0.1 991,685 + DVU0898 0.45 +0.1 991,730 + DVU0898 0.50 +0.0 991,738 - DVU0898 0.51 +0.4 991,738 - DVU0898 0.51 -0.7 991,793 - DVU0898 0.57 -0.5 991,821 + DVU0898 0.60 +0.0 991,876 + DVU0898 0.67 +0.7 991,914 + DVU0898 0.71 -0.2 991,937 + DVU0898 0.74 +0.2 991,998 + DVU0898 0.80 -1.1 992,090 - -0.6 992,139 - -0.0 992,341 - DVU0899 0.67 -0.3 992,367 - DVU0899 0.77 -1.7
Or see this region's nucleotide sequence