Experiment: MoLS4 with L-Tryptophan as nutrient source 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0700 and glcB are separated by 241 nucleotides glcB and DVU0702 are separated by 615 nucleotides
DVU0700: DVU0700 - methyl-accepting chemotaxis protein (TIGR), at 776,063 to 778,519
DVU0700
DVU0701: glcB - malate synthase G (TIGR), at 778,761 to 780,950
glcB
DVU0702: DVU0702 - cytochrome c family protein (TIGR), at 781,566 to 782,012
DVU0702
Position (kb) 778
779
780
781 Strain fitness (log2 ratio) -2
-1
0
1
2 at 777.765 kb on - strand, within DVU0700 at 777.817 kb on + strand, within DVU0700 at 777.817 kb on + strand, within DVU0700 at 777.817 kb on + strand, within DVU0700 at 777.860 kb on + strand, within DVU0700 at 777.914 kb on + strand, within DVU0700 at 777.956 kb on - strand, within DVU0700 at 777.974 kb on + strand, within DVU0700 at 777.995 kb on + strand, within DVU0700 at 778.022 kb on + strand, within DVU0700 at 778.030 kb on - strand, within DVU0700 at 778.095 kb on + strand, within DVU0700 at 778.129 kb on - strand, within DVU0700 at 778.168 kb on - strand, within DVU0700 at 778.187 kb on + strand, within DVU0700 at 778.187 kb on - strand, within DVU0700 at 778.187 kb on - strand, within DVU0700 at 778.223 kb on - strand, within DVU0700 at 778.303 kb on + strand at 778.310 kb on + strand at 778.351 kb on - strand at 778.386 kb on - strand at 778.388 kb on + strand at 778.388 kb on + strand at 778.396 kb on - strand at 778.408 kb on + strand at 778.416 kb on - strand at 778.482 kb on - strand at 778.497 kb on - strand at 778.514 kb on + strand at 778.514 kb on + strand at 778.514 kb on + strand at 778.522 kb on - strand at 778.522 kb on - strand at 778.549 kb on + strand at 778.557 kb on - strand at 778.562 kb on - strand at 778.591 kb on - strand at 778.652 kb on + strand at 778.652 kb on + strand at 778.660 kb on - strand at 778.747 kb on - strand at 778.803 kb on + strand at 778.811 kb on - strand at 778.943 kb on + strand at 778.945 kb on - strand at 778.998 kb on + strand, within glcB at 778.998 kb on + strand, within glcB at 779.000 kb on + strand, within glcB at 779.050 kb on + strand, within glcB at 779.160 kb on + strand, within glcB at 779.181 kb on + strand, within glcB at 779.186 kb on + strand, within glcB at 779.192 kb on - strand, within glcB at 779.194 kb on - strand, within glcB at 779.218 kb on - strand, within glcB at 779.226 kb on - strand, within glcB at 779.235 kb on + strand, within glcB at 779.243 kb on - strand, within glcB at 779.245 kb on - strand, within glcB at 779.269 kb on - strand, within glcB at 779.269 kb on - strand, within glcB at 779.312 kb on + strand, within glcB at 779.400 kb on - strand, within glcB at 779.434 kb on + strand, within glcB at 779.443 kb on - strand, within glcB at 779.654 kb on + strand, within glcB at 779.654 kb on + strand, within glcB at 779.654 kb on + strand, within glcB at 779.662 kb on - strand, within glcB at 779.662 kb on - strand, within glcB at 779.662 kb on - strand, within glcB at 779.662 kb on - strand, within glcB at 779.666 kb on + strand, within glcB at 779.666 kb on + strand, within glcB at 779.751 kb on + strand, within glcB at 779.751 kb on + strand, within glcB at 779.759 kb on - strand, within glcB at 779.759 kb on - strand, within glcB at 779.791 kb on + strand, within glcB at 779.799 kb on - strand, within glcB at 779.801 kb on + strand, within glcB at 779.835 kb on + strand, within glcB at 779.843 kb on - strand, within glcB at 779.875 kb on - strand, within glcB at 779.878 kb on - strand, within glcB at 779.891 kb on + strand, within glcB at 779.895 kb on + strand, within glcB at 779.913 kb on - strand, within glcB at 779.953 kb on + strand, within glcB at 779.955 kb on + strand, within glcB at 779.971 kb on - strand, within glcB at 779.999 kb on + strand, within glcB at 779.999 kb on + strand, within glcB at 779.999 kb on + strand, within glcB at 779.999 kb on + strand, within glcB at 780.049 kb on - strand, within glcB at 780.068 kb on + strand, within glcB at 780.085 kb on + strand, within glcB at 780.103 kb on - strand, within glcB at 780.172 kb on + strand, within glcB at 780.183 kb on - strand, within glcB at 780.233 kb on + strand, within glcB at 780.295 kb on - strand, within glcB at 780.333 kb on - strand, within glcB at 780.402 kb on - strand, within glcB at 780.418 kb on + strand, within glcB at 780.420 kb on + strand, within glcB at 780.430 kb on - strand, within glcB at 780.435 kb on - strand, within glcB at 780.588 kb on + strand, within glcB at 780.589 kb on - strand, within glcB at 780.609 kb on + strand, within glcB at 780.617 kb on - strand, within glcB at 780.617 kb on - strand, within glcB at 780.716 kb on + strand, within glcB at 780.811 kb on - strand at 780.916 kb on + strand at 780.930 kb on - strand at 780.945 kb on - strand at 780.989 kb on + strand at 781.065 kb on - strand at 781.070 kb on - strand at 781.151 kb on + strand at 781.193 kb on + strand at 781.230 kb on + strand at 781.238 kb on - strand at 781.330 kb on + strand at 781.389 kb on - strand at 781.391 kb on + strand at 781.399 kb on - strand at 781.463 kb on + strand at 781.677 kb on + strand, within DVU0702 at 781.737 kb on - strand, within DVU0702 at 781.737 kb on - strand, within DVU0702 at 781.867 kb on + strand, within DVU0702 at 781.916 kb on + strand, within DVU0702 at 781.934 kb on + strand, within DVU0702 at 781.944 kb on - strand, within DVU0702
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan as nutrient source 10mM remove 777,765 - DVU0700 0.69 -0.1 777,817 + DVU0700 0.71 +0.7 777,817 + DVU0700 0.71 -0.2 777,817 + DVU0700 0.71 +0.0 777,860 + DVU0700 0.73 -0.1 777,914 + DVU0700 0.75 -1.0 777,956 - DVU0700 0.77 -0.5 777,974 + DVU0700 0.78 -0.3 777,995 + DVU0700 0.79 -0.0 778,022 + DVU0700 0.80 +1.6 778,030 - DVU0700 0.80 -0.2 778,095 + DVU0700 0.83 -1.1 778,129 - DVU0700 0.84 -0.0 778,168 - DVU0700 0.86 -0.8 778,187 + DVU0700 0.86 +0.2 778,187 - DVU0700 0.86 -0.7 778,187 - DVU0700 0.86 -0.5 778,223 - DVU0700 0.88 +0.1 778,303 + +0.2 778,310 + +1.4 778,351 - +0.3 778,386 - -0.0 778,388 + +0.1 778,388 + +0.5 778,396 - +0.2 778,408 + +0.5 778,416 - -1.9 778,482 - -0.3 778,497 - -0.2 778,514 + -0.0 778,514 + +0.3 778,514 + -1.1 778,522 - -0.6 778,522 - +1.2 778,549 + -0.2 778,557 - -0.2 778,562 - -0.1 778,591 - -1.5 778,652 + -0.1 778,652 + +0.1 778,660 - -0.2 778,747 - +0.4 778,803 + -0.2 778,811 - -0.4 778,943 + +1.4 778,945 - +0.8 778,998 + glcB DVU0701 0.11 -0.2 778,998 + glcB DVU0701 0.11 -0.4 779,000 + glcB DVU0701 0.11 -0.5 779,050 + glcB DVU0701 0.13 -1.3 779,160 + glcB DVU0701 0.18 -0.3 779,181 + glcB DVU0701 0.19 -0.4 779,186 + glcB DVU0701 0.19 +0.4 779,192 - glcB DVU0701 0.20 -1.9 779,194 - glcB DVU0701 0.20 -0.5 779,218 - glcB DVU0701 0.21 +0.1 779,226 - glcB DVU0701 0.21 +0.2 779,235 + glcB DVU0701 0.22 +0.2 779,243 - glcB DVU0701 0.22 +0.4 779,245 - glcB DVU0701 0.22 +0.2 779,269 - glcB DVU0701 0.23 +0.3 779,269 - glcB DVU0701 0.23 +0.9 779,312 + glcB DVU0701 0.25 +0.0 779,400 - glcB DVU0701 0.29 +0.0 779,434 + glcB DVU0701 0.31 +0.3 779,443 - glcB DVU0701 0.31 +0.1 779,654 + glcB DVU0701 0.41 -0.2 779,654 + glcB DVU0701 0.41 -0.0 779,654 + glcB DVU0701 0.41 -0.2 779,662 - glcB DVU0701 0.41 +0.1 779,662 - glcB DVU0701 0.41 +0.0 779,662 - glcB DVU0701 0.41 -0.0 779,662 - glcB DVU0701 0.41 -0.3 779,666 + glcB DVU0701 0.41 +0.6 779,666 + glcB DVU0701 0.41 +0.0 779,751 + glcB DVU0701 0.45 +0.1 779,751 + glcB DVU0701 0.45 +0.4 779,759 - glcB DVU0701 0.46 -0.6 779,759 - glcB DVU0701 0.46 -0.7 779,791 + glcB DVU0701 0.47 +0.2 779,799 - glcB DVU0701 0.47 +0.2 779,801 + glcB DVU0701 0.47 -0.2 779,835 + glcB DVU0701 0.49 -0.2 779,843 - glcB DVU0701 0.49 -0.1 779,875 - glcB DVU0701 0.51 -1.0 779,878 - glcB DVU0701 0.51 -0.4 779,891 + glcB DVU0701 0.52 +1.7 779,895 + glcB DVU0701 0.52 -0.8 779,913 - glcB DVU0701 0.53 -1.1 779,953 + glcB DVU0701 0.54 -0.5 779,955 + glcB DVU0701 0.55 +0.0 779,971 - glcB DVU0701 0.55 -0.1 779,999 + glcB DVU0701 0.57 -0.0 779,999 + glcB DVU0701 0.57 +0.1 779,999 + glcB DVU0701 0.57 +0.4 779,999 + glcB DVU0701 0.57 +0.1 780,049 - glcB DVU0701 0.59 -0.7 780,068 + glcB DVU0701 0.60 -0.1 780,085 + glcB DVU0701 0.60 +0.7 780,103 - glcB DVU0701 0.61 +0.3 780,172 + glcB DVU0701 0.64 -0.8 780,183 - glcB DVU0701 0.65 -0.5 780,233 + glcB DVU0701 0.67 +0.7 780,295 - glcB DVU0701 0.70 -0.1 780,333 - glcB DVU0701 0.72 -0.0 780,402 - glcB DVU0701 0.75 -0.3 780,418 + glcB DVU0701 0.76 +0.0 780,420 + glcB DVU0701 0.76 -1.5 780,430 - glcB DVU0701 0.76 +0.9 780,435 - glcB DVU0701 0.76 -0.2 780,588 + glcB DVU0701 0.83 +0.7 780,589 - glcB DVU0701 0.83 -0.2 780,609 + glcB DVU0701 0.84 -0.4 780,617 - glcB DVU0701 0.85 -1.3 780,617 - glcB DVU0701 0.85 -0.3 780,716 + glcB DVU0701 0.89 -0.8 780,811 - -0.1 780,916 + +0.1 780,930 - +0.3 780,945 - -0.2 780,989 + -0.3 781,065 - +0.3 781,070 - -1.2 781,151 + +0.2 781,193 + -0.6 781,230 + -0.1 781,238 - +0.3 781,330 + +0.3 781,389 - -1.0 781,391 + -0.0 781,399 - +0.5 781,463 + -0.2 781,677 + DVU0702 0.25 -0.5 781,737 - DVU0702 0.38 +0.6 781,737 - DVU0702 0.38 +2.4 781,867 + DVU0702 0.67 +0.2 781,916 + DVU0702 0.78 -0.4 781,934 + DVU0702 0.82 -0.0 781,944 - DVU0702 0.85 +2.4
Or see this region's nucleotide sequence