Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002342

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,628,771	+		ABIE53_002341	0.58	-1.3
2,628,772	-		ABIE53_002341	0.58	+0.5
2,628,772	-		ABIE53_002341	0.58	+0.3
2,628,772	-		ABIE53_002341	0.58	-0.2
2,628,772	-		ABIE53_002341	0.58	+0.3
2,628,772	-		ABIE53_002341	0.58	-2.0
2,628,787	-		ABIE53_002341	0.60	-2.6
2,628,834	-		ABIE53_002341	0.65	+0.5
2,628,845	+		ABIE53_002341	0.66	-1.3
2,628,845	+		ABIE53_002341	0.66	+0.3
2,628,846	-		ABIE53_002341	0.66	-0.7
2,628,956	+		ABIE53_002341	0.78	+0.7
2,628,956	+		ABIE53_002341	0.78	-0.0
2,628,957	-		ABIE53_002341	0.78	-1.2
2,628,957	-		ABIE53_002341	0.78	-1.6
2,629,013	+		ABIE53_002341	0.84	+0.3
2,629,135	+				-1.5
2,629,135	+				-2.6
2,629,137	+				-1.0
2,629,137	+				-1.4
2,629,137	+				+0.2
2,629,138	-				+0.1
2,629,193	+				+1.3
2,629,211	-				+0.3
2,629,216	+				-0.3
2,629,216	+				-1.3
2,629,216	+				-1.0
2,629,217	-				+0.3
2,629,217	-				-1.0
2,629,217	-				-1.1
2,629,217	-				+1.0
2,629,217	-				-0.7
2,629,217	-				+0.3
2,629,217	-				-0.3
2,629,217	-				+0.3
2,629,217	-				+1.7
2,629,217	-				-0.2
2,629,217	-				-0.5
2,629,217	-				-1.0
2,629,218	+				-1.8
2,629,218	+				-0.2
2,629,218	+				-0.5
2,629,219	-				-0.4
2,629,223	-				-1.3
2,629,223	-				-1.9
2,629,223	-				-1.2
2,629,223	-				-1.0
2,629,228	-				-1.0
2,629,228	-				+0.0
2,629,448	-		ABIE53_002342	0.16	+0.8
2,629,448	-		ABIE53_002342	0.16	-1.6
2,629,448	-		ABIE53_002342	0.16	-1.5
2,629,628	+		ABIE53_002342	0.32	-0.9
2,629,628	+		ABIE53_002342	0.32	-1.4
2,629,629	-		ABIE53_002342	0.33	+0.9
2,629,820	-		ABIE53_002342	0.50	+1.6
2,629,931	+		ABIE53_002342	0.60	-1.5
2,629,931	+		ABIE53_002342	0.60	+2.9
2,629,931	+		ABIE53_002342	0.60	+0.5
2,629,931	+		ABIE53_002342	0.60	-0.8
2,629,931	+		ABIE53_002342	0.60	+0.4
2,629,931	+		ABIE53_002342	0.60	+1.2
2,629,931	+		ABIE53_002342	0.60	-2.4
2,629,931	+		ABIE53_002342	0.60	+0.3
2,629,931	+		ABIE53_002342	0.60	+0.8
2,629,932	-		ABIE53_002342	0.60	+0.3
2,629,932	-		ABIE53_002342	0.60	-0.3
2,629,932	-		ABIE53_002342	0.60	-0.6
2,629,932	-		ABIE53_002342	0.60	-0.0
2,629,932	-		ABIE53_002342	0.60	-1.4
2,629,950	+		ABIE53_002342	0.62	-1.0
2,629,951	-		ABIE53_002342	0.62	-0.5
2,629,951	-		ABIE53_002342	0.62	+0.4
2,630,311	+				+0.2
2,630,311	+				+1.0
2,630,311	+				+2.3
2,630,311	+				-2.8
2,630,311	+				+0.7
2,630,311	+				+0.5
2,630,311	+				-0.9
2,630,311	+				-2.4
2,630,311	+				+0.3
2,630,312	-				+2.3
2,630,312	-				-1.4
2,630,312	-				-0.7
2,630,312	-				-0.8
2,630,312	-				+0.7
2,630,312	-				-1.3
2,630,312	-				-0.3
2,630,312	-				+1.3
2,630,312	-				-1.0
2,630,371	+				+1.3
2,630,372	-				+0.5
2,630,372	-				-0.5
2,630,453	+				+0.3
2,630,453	+				-1.1
2,630,453	+				-1.0
2,630,600	+				-0.9
2,630,600	+				+0.5
2,630,600	+				+0.9
2,630,601	-				-1.9
2,630,601	-				+2.4
2,630,601	-				+0.1
2,630,601	-				-0.0
2,630,603	+				+0.8
2,630,603	+				-0.5
2,630,603	+				+1.3
2,630,603	+				+1.1
2,630,603	+				-1.6
2,630,603	+				+1.3
2,630,603	+				-0.1
2,630,603	+				-0.3
2,630,604	-				+1.3
2,630,604	-				-0.3
2,630,604	-				-1.9
2,630,604	-				-0.7
2,630,669	+		ABIE53_002343	0.11	-1.5
2,630,669	+		ABIE53_002343	0.11	+1.0
2,630,669	+		ABIE53_002343	0.11	+0.3
2,630,669	+		ABIE53_002343	0.11	-1.4
2,630,669	+		ABIE53_002343	0.11	+2.3
2,630,669	+		ABIE53_002343	0.11	+0.7
2,630,669	+		ABIE53_002343	0.11	-0.1
2,630,670	-		ABIE53_002343	0.12	-0.6
2,630,670	-		ABIE53_002343	0.12	-0.0
2,630,670	-		ABIE53_002343	0.12	+1.1
2,630,670	-		ABIE53_002343	0.12	-0.6
2,630,670	-		ABIE53_002343	0.12	-0.6
2,630,825	+		ABIE53_002343	0.33	-0.9
2,630,825	+		ABIE53_002343	0.33	+0.7
2,630,826	-		ABIE53_002343	0.33	-1.0
2,630,873	+		ABIE53_002343	0.39	+2.3
2,630,873	+		ABIE53_002343	0.39	-0.9
2,630,873	+		ABIE53_002343	0.39	-1.4
2,630,874	-		ABIE53_002343	0.39	+0.3
2,630,874	-		ABIE53_002343	0.39	-1.8
2,630,874	-		ABIE53_002343	0.39	-0.8
2,630,900	-		ABIE53_002343	0.43	+1.5
2,630,957	+		ABIE53_002343	0.50	-1.3
2,630,958	-		ABIE53_002343	0.51	-2.4
2,630,958	-		ABIE53_002343	0.51	-1.2
2,630,958	-		ABIE53_002343	0.51	-0.6
2,630,960	+		ABIE53_002343	0.51	-0.6
2,630,960	+		ABIE53_002343	0.51	+1.9
2,630,960	+		ABIE53_002343	0.51	-1.0
2,630,960	+		ABIE53_002343	0.51	-1.4
2,630,960	+		ABIE53_002343	0.51	-0.1
2,630,960	+		ABIE53_002343	0.51	-0.1
2,630,960	+		ABIE53_002343	0.51	-1.0
2,630,960	+		ABIE53_002343	0.51	-0.3
2,630,960	+		ABIE53_002343	0.51	-0.8
2,630,961	-		ABIE53_002343	0.51	-0.0
2,630,961	-		ABIE53_002343	0.51	+0.0
2,630,961	-		ABIE53_002343	0.51	-0.3
2,631,036	-		ABIE53_002343	0.61	-0.6
2,631,036	-		ABIE53_002343	0.61	-0.6
2,631,101	+		ABIE53_002343	0.70	-0.0
2,631,101	+		ABIE53_002343	0.70	-1.2
2,631,101	+		ABIE53_002343	0.70	-1.0
2,631,101	+		ABIE53_002343	0.70	-0.3
2,631,101	+		ABIE53_002343	0.70	-0.5
2,631,101	+		ABIE53_002343	0.70	-1.0
2,631,101	+		ABIE53_002343	0.70	-1.3
2,631,102	-		ABIE53_002343	0.70	+0.3
2,631,102	-		ABIE53_002343	0.70	+2.3
2,631,102	-		ABIE53_002343	0.70	+0.4
2,631,143	+		ABIE53_002343	0.76	+1.3
2,631,143	+		ABIE53_002343	0.76	-0.5
2,631,143	+		ABIE53_002343	0.76	+0.7
2,631,144	-		ABIE53_002343	0.76	-0.6
2,631,182	+		ABIE53_002343	0.81	+0.1
2,631,183	-		ABIE53_002343	0.81	-0.5
2,631,183	-		ABIE53_002343	0.81	-1.3
2,631,229	+		ABIE53_002343	0.87	-1.0
2,631,230	-		ABIE53_002343	0.87	+2.3
2,631,239	+		ABIE53_002343	0.89	+2.3
2,631,268	+				-0.7
2,631,268	+				-0.5
2,631,268	+				-0.3
2,631,269	-				+1.3
2,631,269	-				-0.6
2,631,269	-				+0.3
2,631,269	-				-0.3
2,631,269	-				+0.7
2,631,269	-				-0.4
2,631,294	-				-0.3