Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000244 and ABIE53_000245 are separated by 307 nucleotides ABIE53_000245 and ABIE53_000246 are separated by 322 nucleotides
ABIE53_000244: ABIE53_000244 - RHH-type proline utilization regulon transcriptional repressor/proline dehydrogenase/delta 1-pyrroline-5-carboxylate dehydrogenase, at 254,866 to 258,522
_000244
ABIE53_000245: ABIE53_000245 - hypothetical protein, at 258,830 to 258,982
_000245
ABIE53_000246: ABIE53_000246 - primosomal protein N, at 259,305 to 261,554
_000246
Position (kb) 258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 258.224 kb on + strand at 258.225 kb on - strand at 258.225 kb on - strand at 258.404 kb on + strand at 258.405 kb on - strand at 258.516 kb on + strand at 258.517 kb on - strand at 258.582 kb on + strand at 258.582 kb on + strand at 258.583 kb on - strand at 258.583 kb on - strand at 258.594 kb on + strand at 258.594 kb on + strand at 258.693 kb on - strand at 258.738 kb on + strand at 258.739 kb on - strand at 258.761 kb on + strand at 258.773 kb on - strand at 258.817 kb on + strand at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.849 kb on + strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.850 kb on - strand, within ABIE53_000245 at 258.892 kb on + strand, within ABIE53_000245 at 258.893 kb on - strand, within ABIE53_000245 at 258.972 kb on + strand at 258.972 kb on + strand at 258.973 kb on - strand at 258.973 kb on - strand at 259.094 kb on + strand at 259.094 kb on + strand at 259.094 kb on + strand at 259.095 kb on - strand at 259.095 kb on - strand at 259.164 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.223 kb on + strand at 259.224 kb on - strand at 259.224 kb on - strand at 259.224 kb on - strand at 259.224 kb on - strand at 259.231 kb on + strand at 259.231 kb on + strand at 259.232 kb on - strand at 259.274 kb on + strand at 259.274 kb on + strand at 259.275 kb on - strand at 259.275 kb on - strand at 259.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 258,224 + +1.9 258,225 - -0.4 258,225 - +1.1 258,404 + -0.7 258,405 - +0.2 258,516 + +2.8 258,517 - +0.8 258,582 + +0.7 258,582 + -0.2 258,583 - -3.2 258,583 - -2.0 258,594 + +2.3 258,594 + +1.2 258,693 - +0.7 258,738 + +3.4 258,739 - -1.4 258,761 + -1.0 258,773 - +0.5 258,817 + -0.9 258,849 + ABIE53_000245 0.12 +0.1 258,849 + ABIE53_000245 0.12 -1.4 258,849 + ABIE53_000245 0.12 -0.2 258,849 + ABIE53_000245 0.12 +1.0 258,849 + ABIE53_000245 0.12 -0.5 258,849 + ABIE53_000245 0.12 +0.3 258,849 + ABIE53_000245 0.12 -1.8 258,849 + ABIE53_000245 0.12 -1.4 258,849 + ABIE53_000245 0.12 -0.5 258,849 + ABIE53_000245 0.12 +0.7 258,850 - ABIE53_000245 0.13 -0.8 258,850 - ABIE53_000245 0.13 +0.0 258,850 - ABIE53_000245 0.13 -0.9 258,850 - ABIE53_000245 0.13 -1.4 258,850 - ABIE53_000245 0.13 -0.2 258,850 - ABIE53_000245 0.13 -0.7 258,850 - ABIE53_000245 0.13 -1.0 258,850 - ABIE53_000245 0.13 -0.7 258,892 + ABIE53_000245 0.41 -0.0 258,893 - ABIE53_000245 0.41 +3.8 258,972 + +0.2 258,972 + -1.9 258,973 - -0.7 258,973 - -0.0 259,094 + +0.0 259,094 + +0.2 259,094 + +0.8 259,095 - +3.5 259,095 - -0.5 259,164 + -0.0 259,223 + +1.8 259,223 + +0.2 259,223 + -0.4 259,223 + -1.4 259,223 + +2.4 259,223 + +0.2 259,223 + +2.8 259,223 + +0.2 259,223 + +1.0 259,223 + -1.0 259,223 + +1.2 259,224 - +0.4 259,224 - +0.8 259,224 - -0.9 259,224 - +5.2 259,231 + -1.0 259,231 + -0.8 259,232 - +0.2 259,274 + -1.0 259,274 + -0.1 259,275 - +1.8 259,275 - +1.2 259,275 - +1.6
Or see this region's nucleotide sequence