Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2934

Experiment: KB with Brucine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2932 and Psyr_2933 are separated by 162 nucleotidesPsyr_2933 and Psyr_2934 are separated by 57 nucleotidesPsyr_2934 and Psyr_2935 are separated by 203 nucleotidesPsyr_2935 and Psyr_2936 are separated by 61 nucleotides Psyr_2932: Psyr_2932 - Protein of unknown function DUF156, at 3,521,002 to 3,521,295 _2932 Psyr_2933: Psyr_2933 - transcriptional regulator, TetR family, at 3,521,458 to 3,522,039 _2933 Psyr_2934: Psyr_2934 - NADH:flavin oxidoreductase/NADH oxidase, at 3,522,097 to 3,523,200 _2934 Psyr_2935: Psyr_2935 - conserved hypothetical protein, at 3,523,404 to 3,523,790 _2935 Psyr_2936: Psyr_2936 - conserved hypothetical protein, at 3,523,852 to 3,524,508 _2936 Position (kb) 3522 3523 3524Strain fitness (log2 ratio) -2 -1 0 1 2at 3521.365 kb on - strandat 3521.371 kb on + strandat 3521.373 kb on + strandat 3521.373 kb on + strandat 3521.373 kb on + strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.374 kb on - strandat 3521.420 kb on - strandat 3521.458 kb on - strandat 3521.558 kb on + strand, within Psyr_2933at 3521.590 kb on + strand, within Psyr_2933at 3521.590 kb on + strand, within Psyr_2933at 3521.590 kb on + strand, within Psyr_2933at 3521.590 kb on + strand, within Psyr_2933at 3521.590 kb on + strand, within Psyr_2933at 3522.092 kb on - strandat 3522.092 kb on - strandat 3522.111 kb on + strandat 3522.117 kb on + strandat 3522.168 kb on + strandat 3522.238 kb on + strand, within Psyr_2934at 3522.238 kb on + strand, within Psyr_2934at 3522.238 kb on + strand, within Psyr_2934at 3522.238 kb on + strand, within Psyr_2934at 3522.239 kb on - strand, within Psyr_2934at 3522.239 kb on - strand, within Psyr_2934at 3522.239 kb on - strand, within Psyr_2934at 3522.239 kb on - strand, within Psyr_2934at 3522.239 kb on - strand, within Psyr_2934at 3522.239 kb on - strand, within Psyr_2934at 3522.310 kb on + strand, within Psyr_2934at 3522.311 kb on - strand, within Psyr_2934at 3522.411 kb on - strand, within Psyr_2934at 3522.498 kb on + strand, within Psyr_2934at 3522.499 kb on - strand, within Psyr_2934at 3522.502 kb on + strand, within Psyr_2934at 3522.522 kb on - strand, within Psyr_2934at 3522.580 kb on + strand, within Psyr_2934at 3522.581 kb on - strand, within Psyr_2934at 3522.581 kb on - strand, within Psyr_2934at 3522.581 kb on - strand, within Psyr_2934at 3522.581 kb on - strand, within Psyr_2934at 3522.581 kb on - strand, within Psyr_2934at 3522.763 kb on - strand, within Psyr_2934at 3522.822 kb on + strand, within Psyr_2934at 3522.895 kb on + strand, within Psyr_2934at 3523.000 kb on - strand, within Psyr_2934at 3523.006 kb on + strand, within Psyr_2934at 3523.007 kb on - strand, within Psyr_2934at 3523.007 kb on - strand, within Psyr_2934at 3523.007 kb on - strand, within Psyr_2934at 3523.079 kb on + strand, within Psyr_2934at 3523.080 kb on - strand, within Psyr_2934at 3523.150 kb on + strandat 3523.171 kb on + strandat 3523.171 kb on + strandat 3523.171 kb on + strandat 3523.172 kb on - strandat 3523.172 kb on - strandat 3523.172 kb on - strandat 3523.172 kb on - strandat 3523.195 kb on + strandat 3523.195 kb on + strandat 3523.195 kb on + strandat 3523.195 kb on + strandat 3523.195 kb on + strandat 3523.195 kb on + strandat 3523.196 kb on - strandat 3523.196 kb on - strandat 3523.198 kb on + strandat 3523.199 kb on - strandat 3523.199 kb on - strandat 3523.249 kb on - strandat 3523.279 kb on + strandat 3523.279 kb on + strandat 3523.360 kb on - strandat 3523.395 kb on + strandat 3523.395 kb on + strandat 3523.396 kb on - strandat 3523.396 kb on - strandat 3523.440 kb on + strandat 3523.441 kb on - strandat 3523.441 kb on - strandat 3523.470 kb on + strand, within Psyr_2935at 3523.470 kb on + strand, within Psyr_2935at 3523.470 kb on + strand, within Psyr_2935at 3523.470 kb on + strand, within Psyr_2935at 3523.471 kb on - strand, within Psyr_2935at 3523.471 kb on - strand, within Psyr_2935at 3523.471 kb on - strand, within Psyr_2935at 3523.474 kb on + strand, within Psyr_2935at 3523.474 kb on + strand, within Psyr_2935at 3523.474 kb on + strand, within Psyr_2935at 3523.474 kb on + strand, within Psyr_2935at 3523.474 kb on + strand, within Psyr_2935at 3523.474 kb on + strand, within Psyr_2935at 3523.475 kb on - strand, within Psyr_2935at 3523.475 kb on - strand, within Psyr_2935at 3523.475 kb on - strand, within Psyr_2935at 3523.475 kb on - strand, within Psyr_2935at 3523.475 kb on - strand, within Psyr_2935at 3523.475 kb on - strand, within Psyr_2935at 3523.523 kb on + strand, within Psyr_2935at 3523.539 kb on + strand, within Psyr_2935at 3523.539 kb on + strand, within Psyr_2935at 3523.539 kb on + strand, within Psyr_2935at 3523.540 kb on - strand, within Psyr_2935at 3523.540 kb on - strand, within Psyr_2935at 3523.540 kb on - strand, within Psyr_2935at 3523.540 kb on - strand, within Psyr_2935at 3523.540 kb on - strand, within Psyr_2935at 3523.588 kb on - strand, within Psyr_2935at 3523.588 kb on - strand, within Psyr_2935at 3523.610 kb on + strand, within Psyr_2935at 3523.698 kb on - strand, within Psyr_2935at 3523.698 kb on - strand, within Psyr_2935at 3523.710 kb on + strand, within Psyr_2935at 3523.711 kb on - strand, within Psyr_2935at 3523.719 kb on + strand, within Psyr_2935at 3523.720 kb on - strand, within Psyr_2935at 3523.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Brucine 10 mM
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3,521,365 - -0.0
3,521,371 + +0.1
3,521,373 + -1.4
3,521,373 + -0.1
3,521,373 + +2.2
3,521,374 - -0.6
3,521,374 - -1.1
3,521,374 - +0.3
3,521,374 - +1.1
3,521,374 - -0.8
3,521,374 - +0.5
3,521,374 - -0.5
3,521,374 - -0.8
3,521,374 - -0.4
3,521,374 - -0.1
3,521,420 - -1.6
3,521,458 - -2.2
3,521,558 + Psyr_2933 0.17 -0.2
3,521,590 + Psyr_2933 0.23 -1.3
3,521,590 + Psyr_2933 0.23 +0.3
3,521,590 + Psyr_2933 0.23 -1.5
3,521,590 + Psyr_2933 0.23 -1.4
3,521,590 + Psyr_2933 0.23 +0.1
3,522,092 - -0.0
3,522,092 - -1.0
3,522,111 + +2.0
3,522,117 + -1.4
3,522,168 + -0.7
3,522,238 + Psyr_2934 0.13 -0.2
3,522,238 + Psyr_2934 0.13 -0.8
3,522,238 + Psyr_2934 0.13 +0.7
3,522,238 + Psyr_2934 0.13 +0.6
3,522,239 - Psyr_2934 0.13 +0.6
3,522,239 - Psyr_2934 0.13 +0.6
3,522,239 - Psyr_2934 0.13 -0.5
3,522,239 - Psyr_2934 0.13 -0.4
3,522,239 - Psyr_2934 0.13 +0.3
3,522,239 - Psyr_2934 0.13 -1.1
3,522,310 + Psyr_2934 0.19 -0.0
3,522,311 - Psyr_2934 0.19 -0.6
3,522,411 - Psyr_2934 0.28 -0.3
3,522,498 + Psyr_2934 0.36 -0.8
3,522,499 - Psyr_2934 0.36 -0.7
3,522,502 + Psyr_2934 0.37 +0.2
3,522,522 - Psyr_2934 0.38 +0.3
3,522,580 + Psyr_2934 0.44 -2.2
3,522,581 - Psyr_2934 0.44 +1.1
3,522,581 - Psyr_2934 0.44 -1.0
3,522,581 - Psyr_2934 0.44 +0.3
3,522,581 - Psyr_2934 0.44 +0.7
3,522,581 - Psyr_2934 0.44 +0.6
3,522,763 - Psyr_2934 0.60 +1.1
3,522,822 + Psyr_2934 0.66 +0.2
3,522,895 + Psyr_2934 0.72 +2.2
3,523,000 - Psyr_2934 0.82 -0.6
3,523,006 + Psyr_2934 0.82 -0.3
3,523,007 - Psyr_2934 0.82 +0.0
3,523,007 - Psyr_2934 0.82 +0.8
3,523,007 - Psyr_2934 0.82 +1.7
3,523,079 + Psyr_2934 0.89 -0.6
3,523,080 - Psyr_2934 0.89 +1.4
3,523,150 + +0.1
3,523,171 + +2.4
3,523,171 + +0.2
3,523,171 + -0.2
3,523,172 - +0.4
3,523,172 - -1.5
3,523,172 - -1.2
3,523,172 - +0.4
3,523,195 + -0.2
3,523,195 + +0.5
3,523,195 + -0.6
3,523,195 + -0.8
3,523,195 + -0.5
3,523,195 + +0.2
3,523,196 - +0.5
3,523,196 - -0.1
3,523,198 + -0.4
3,523,199 - -0.5
3,523,199 - +0.3
3,523,249 - +1.8
3,523,279 + +1.0
3,523,279 + +0.1
3,523,360 - +0.5
3,523,395 + -0.8
3,523,395 + +1.2
3,523,396 - +0.2
3,523,396 - +2.0
3,523,440 + +1.2
3,523,441 - +1.5
3,523,441 - +0.4
3,523,470 + Psyr_2935 0.17 +0.9
3,523,470 + Psyr_2935 0.17 +0.8
3,523,470 + Psyr_2935 0.17 +0.4
3,523,470 + Psyr_2935 0.17 +0.9
3,523,471 - Psyr_2935 0.17 +1.2
3,523,471 - Psyr_2935 0.17 +0.5
3,523,471 - Psyr_2935 0.17 +0.4
3,523,474 + Psyr_2935 0.18 +0.1
3,523,474 + Psyr_2935 0.18 +0.7
3,523,474 + Psyr_2935 0.18 -0.7
3,523,474 + Psyr_2935 0.18 -0.9
3,523,474 + Psyr_2935 0.18 -0.4
3,523,474 + Psyr_2935 0.18 +0.0
3,523,475 - Psyr_2935 0.18 +0.4
3,523,475 - Psyr_2935 0.18 -0.0
3,523,475 - Psyr_2935 0.18 -0.1
3,523,475 - Psyr_2935 0.18 +0.8
3,523,475 - Psyr_2935 0.18 +0.6
3,523,475 - Psyr_2935 0.18 +0.6
3,523,523 + Psyr_2935 0.31 -0.1
3,523,539 + Psyr_2935 0.35 -0.8
3,523,539 + Psyr_2935 0.35 +1.2
3,523,539 + Psyr_2935 0.35 +0.1
3,523,540 - Psyr_2935 0.35 +0.9
3,523,540 - Psyr_2935 0.35 -0.7
3,523,540 - Psyr_2935 0.35 -0.1
3,523,540 - Psyr_2935 0.35 +1.2
3,523,540 - Psyr_2935 0.35 -1.2
3,523,588 - Psyr_2935 0.48 +0.7
3,523,588 - Psyr_2935 0.48 -0.0
3,523,610 + Psyr_2935 0.53 -0.5
3,523,698 - Psyr_2935 0.76 +0.2
3,523,698 - Psyr_2935 0.76 +0.3
3,523,710 + Psyr_2935 0.79 -0.2
3,523,711 - Psyr_2935 0.79 -0.0
3,523,719 + Psyr_2935 0.81 -0.5
3,523,720 - Psyr_2935 0.82 +2.2
3,523,771 - -0.2

Or see this region's nucleotide sequence